Commit 71fcaa01 authored by MARTIN Pierre's avatar MARTIN Pierre
Browse files

Update README.md

parent 8600d964
......@@ -23,14 +23,14 @@ To launch functional tests, you need to be located at the root of the folder whe
- by providing the results folder of a pipeline already exectuted
```
cd test_folder
python <metagwgs-src>/functional_tests/main.py -step 07_taxo_affi -exp_dir metagwgs-test-datasets-small/output -obs_dir ./results
python metagwgs/functional_tests/main.py -step 07_taxo_affi -exp_dir metagwgs-test-datasets-small/output -obs_dir ./results
```
- by providing a script which will launch the nextflow pipeline [see example](./launch_example.sh) (this example is designed for the "small" dataset with --min_contigs_cpm>1000, using slurm)
```
mkdir test_folder
cd test_folder
cp <metagwgs-src>/functional_tests/launch_example.sh ./
python <metagwgs-src>/functional_tests/main.py -step 07_taxo_affi -exp_dir metagwgs-test-datasets-small/output -obs_dir ./results --script launch_example.sh
cp metagwgs/functional_tests/launch_example.sh ./
python metagwgs/functional_tests/main.py -step 07_taxo_affi -exp_dir metagwgs-test-datasets-small/output -obs_dir ./results --script launch_example.sh
```
## III. Output
......
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