replace '/work' in conf/test_genotoul_workq.config

conf/test_genotoul_workq.config

 process.executor = 'slurm'
 includeConfig 'singularity.config'
-singularity.runOptions = "-B /work/bank/ -B /bank -B /work2 -B /save -B /home -B /work/project -B /usr/local/bioinfo"
+singularity.runOptions = "-B /work/bank/ -B /bank -B /work -B /work2 -B /save -B /home -B /work/project -B /usr/local/bioinfo"
 process.queue = 'workq'
 
 process {

main.nf

@@ -416,9 +416,12 @@ if (!params.skip_kaiju && ('01_clean_qc' in step || '02_assembly' in step || '03
 
       output:
       file("nodes.dmp") into index_kaiju_nodes_final_ch
-      file("kaiju_db_refseq.fmi") into index_kaiju_db_final_ch
+      file("kaiju_db*.fmi") into index_kaiju_db_final_ch
       file("names.dmp") into index_kaiju_names_final_ch
 
+/*      when:
+      index_kaiju_db_final_ch.size() == 1*/
+
       script:
       """
       wget ${database}
@@ -435,7 +438,7 @@ if (!params.skip_kaiju && ('01_clean_qc' in step || '02_assembly' in step || '03
           index_kaiju_nodes_final_ch  = Channel
               .value(kaiju_Path + "/" + kaiju_Path_db + "/nodes.dmp")
           index_kaiju_db_final_ch = Channel
-              .value(kaiju_Path + "/" + kaiju_Path_db + "/kaiju_db_refseq.fmi")
+              .value(kaiju_Path + "/" + kaiju_Path_db + "/kaiju_db*.fmi")
           index_kaiju_names_final_ch = Channel
               .value(kaiju_Path + "/" + kaiju_Path_db + "/names.dmp")
       }