take all selected hits to affiliate contigs

bin/aln2taxaffi.py

@@ -501,9 +501,8 @@ def main():
                 logging.debug(f'PROTEIN {consensual_protein_taxid}, {taxid2rankedlineage[consensual_protein_taxid]}')
 
                 # manage contig affiliation
-                best_hit = [sorted_hits[0]]
                 protein_collate_hits = collate_protein_hits(
-                    best_hit, main_ranks, taxid2rankedlineage, accession2taxid)
+                    sorted_hits, main_ranks, taxid2rankedlineage, accession2taxid)
 
                 add_collate_hits(contig_collate_hits, protein_collate_hits)