change order in multiqc report

assets/multiqc_config.yaml

@@ -29,11 +29,21 @@ module_order:
     - sickle:
         path_filters:
             - '*_sickle.log'
+    - samtools:
+        name : 'Reads before host reads filter'
+        info: 'This section reports of the reads alignement against host genome with bwa.(not sure to be interesting ????)'
+        path_filters:
+            - '*.no_filter.flagstat'
     - samtools:
         name : 'Reads aln on host genome'
         info: 'This section of the cleaned reads alignement against host genome with bwa.'
         path_filters:
             - '*host_filter/*'
+    - samtools:
+        name : 'Reads after host reads filter'
+        info: 'This section reports of the cleaned reads alignement against host genome with bwa.(not sure to be interesting ????)'
+        path_filters:
+            - '*.host_filter.flagstat'
     - fastqc:
         name: 'FastQC (cleaned)'
         info: 'This section of the report shows FastQC results after adapter trimming and cleaning.'
@@ -45,26 +55,16 @@ module_order:
         info: 'This section of the report shows quast results after assembly'
         path_filters:
             - '*_all_contigs_QC/*'
-    - samtools:
-        name : 'Reads before host reads filter'
-        info: 'This section reports of the reads alignement against host genome with bwa.(not sure to be interesting ????)'
-        path_filters:
-            - '*.no_filter.flagstat'
-    - samtools:
-        name : 'Reads after host reads filter'
-        info: 'This section reports of the cleaned reads alignement against host genome with bwa.(not sure to be interesting ????)'
+    - quast:
+        name: 'Quast filtered assembly'
+        info: 'This section of the report shows quast results after filtering of assembly'
         path_filters:
-            - '*.host_filter.flagstat'
+            - '*_select_contigs_QC/*'
     - samtools:
         name : 'Reads after deduplication'
         info: 'This section reports of deduplicated reads alignement against contigs with bwa.'
         path_filters:
             - '*.count_reads_on_contigs.flagstat'
-    - quast:
-        name: 'Quast filtered assembly'
-        info: 'This section of the report shows quast results after filtering of assembly'
-        path_filters:
-            - '*_select_contigs_QC/*'
     - prokka
     - featureCounts