Commit 5839942b authored by Celine Noirot's avatar Celine Noirot
Browse files

add mostdepth dependacies

parent 935aaebc
......@@ -53,9 +53,10 @@ You can directly download the two Singularity containers (`Solution 1`, recommen
cd metagwgs/env/
singularity pull eggnog_mapper.sif oras://registry.forgemia.inra.fr/genotoul-bioinfo/metagwgs/eggnog_mapper:latest
singularity pull metagwgs.sif oras://registry.forgemia.inra.fr/genotoul-bioinfo/metagwgs/metagwgs:latest
singularity pull mosdepth.sif oras://registry.forgemia.inra.fr/genotoul-bioinfo/metagwgs/mosdepth:latest
```
Two files (`metagwgs.sif` and `eggnog_mapper.sif`) must have been downloaded.
Three files (`metagwgs.sif` , `mosdepth.sif` and `eggnog_mapper.sif`) must have been downloaded.
### Solution 2: build the two containers.
......
Bootstrap: docker
From: continuumio/miniconda3
IncludeCmd: yes
%files
env/mosdepth.yml /
%post
apt-get update && apt-get install -y procps && apt-get clean -y
/opt/conda/bin/conda env create -f /mosdepth.yml && /opt/conda/bin/conda clean -a
%environment
export PATH=/opt/conda/envs/mosdepth/bin:$PATH
%runscript
"$@"
name: mosdepth
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- mosdepth=0.3.1
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