1.metagWGS is still under development: you need to use the `dev-test` branch of the metagwgs repository.
1.Make sure you are in the directory where you downloaded `metagwgs` source files and added the three mandatory Singularity images in `metagwgs/env`
Run:
2. Make sure you downloaded all the required data files for metagwgs. If not, they will be downloaded by the pipeline each time you run it in a new project.
```bash
cd metagwgs
git checkout dev-test
git pull
cd functional_tests
```
2. Make sure you are in the directory where you downloaded `metagwgs` source files and added the three mandatory Singularity images in `metagwgs/env`
3. Download the test datasets (expected results + test fastq) from [link-to-test-datasets].
3. Make sure you downloaded all the required data files for metagwgs. If not, they will be downloaded by the pipeline each time you run it in a new project.
4. Download the test datasets (expected results + test fastq) from [link-to-test-datasets].
