Commit 3d99f3d2 authored by MARTIN Pierre's avatar MARTIN Pierre
Browse files

added mosdepth singularity to CI/CD

parent dba6e249
Pipeline #42415 passed with stages
in 19 minutes
*.config linguist-language=nextflow
*.nf linguist-language=nextflow
\ No newline at end of file
*.config linguist-language=groovy
*.nf linguist-language=groovy
\ No newline at end of file
......@@ -13,21 +13,25 @@ singularity-image:
script:
- singularity build metagWGS.sif env/Singularity_recipe_metagWGS
- singularity build eggnog_mapper.sif env/Singularity_recipe_eggnog_mapper
- singularity build mosdepth.sif env/Singularity_recipe_mosdepth
artifacts:
paths:
- metagWGS.sif
- eggnog_mapper.sif
- mosdepth.sif
only:
changes:
- .gitlab-ci.yml
- env/*
when: manual
# Push the image template.sif on the registry
deploy:
stage: deploy
script:
- singularity push --docker-username "${CI_REGISTRY_USER}" --docker-password "${CI_REGISTRY_PASSWORD}" metagWGS.sif oras://"$CI_REGISTRY_IMAGE"/"$CI_PROJECT_NAME":"$CI_COMMIT_TAG"
- singularity push --docker-username "${CI_REGISTRY_USER}" --docker-password "${CI_REGISTRY_PASSWORD}" eggnog_mapper.sif oras://"$CI_REGISTRY_IMAGE"/eggnog_mapper:"$CI_COMMIT_TAG"
- singularity push --docker-username "${CI_REGISTRY_USER}" --docker-password "${CI_REGISTRY_PASSWORD}" mosdepth.sif oras://"$CI_REGISTRY_IMAGE"/mosdepth:"$CI_COMMIT_TAG"
only:
changes:
- .gitlab-ci.yml
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment