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genotoul-bioinfo
metagWGS
Commits
2b23244c
Commit
2b23244c
authored
Jan 14, 2022
by
Jean Mainguy
Browse files
add default parameters for genotoul profile
parent
05d051e0
Pipeline
#48010
skipped with stage
Changes
1
Pipelines
1
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conf/genotoul.config
View file @
2b23244c
...
...
@@ -3,3 +3,15 @@ includeConfig 'singularity.config'
process
.
executor
=
'slurm'
singularity
.
runOptions
=
"-B /work/bank/ -B /bank -B /work2 -B /work -B /save -B /home -B /work/project -B /usr/local/bioinfo"
process
.
queue
=
'workq'
params
{
kaiju_db_dir
=
"/bank/kaijudb/kaijudb_refseq_2020-05-25/"
eggnog_mapper_db_dir
=
"/bank/eggnog-mapper/eggnog-mapper-2.0.4-rf1/data/"
eggnog_mapper_db_download
=
false
taxdump
=
"/work/bank/ncbi/blast/nr/nr_2022-1-5/flat/pub/taxonomy/new_taxdump/"
accession2taxid
=
"/work/bank/ncbi/blast/nr/nr_2022-1-5/flat/pub/taxonomy/accession2taxid/prot.accession2taxid.FULL"
diamond_bank
=
"/bank/ncbi/blast/nr/current/diamond/nr.dmnd"
//
change
following
path
if
you
want
to
use
genotoul
genomes
:
host_index
=
""
host_fasta
=
""
}
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