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metagWGS
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genotoul-bioinfo
metagWGS
Commits
039f85ac
Commit
039f85ac
authored
Nov 17, 2020
by
Celine Noirot
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Update .gitlab-ci.yml
parent
7a272f39
Pipeline
#21828
failed with stages
in 38 seconds
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.gitlab-ci.yml
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039f85ac
image
:
nextflow/nextflow
push
:
script
:
-
nextflow run ./main.nf --help
# recipe for building singularity image and deploy it on the registery for bwa version 0.7.17
image
:
name
:
quay.io/singularity/singularity:v3.4.0
entrypoint
:
[
"
"
]
stages
:
-
build
-
deploy
# Build Singularity container bwa_v0.7.17.sif
singularity-image
:
stage
:
build
script
:
-
singularity build metagWGS.sif env/Singularity_recipe_metagWGS_dependancies
artifacts
:
paths
:
-
metagWGS.sif
# Push the image template.sif on the registry
deploy
:
stage
:
deploy
script
:
-
singularity push --docker-username "${CI_REGISTRY_USER}" --docker-password "${CI_REGISTRY_PASSWORD}" metagWGS.sif oras://"$CI_REGISTRY_IMAGE"/"$CI_PROJECT_NAME":"$CI_COMMIT_TAG"
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