Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
genotoul-bioinfo
jvenn
Commits
fc4bcffc
Commit
fc4bcffc
authored
May 23, 2014
by
Jerome Mariette
Browse files
No commit message
No commit message
parent
52864607
Changes
1
Hide whitespace changes
Inline
Side-by-side
BMC_jvenn/bmc_jvenn.tex
View file @
fc4bcffc
...
...
@@ -347,16 +347,15 @@ a group of species given by a cluster leader of DNA sequences. Displaying such
data with the ``lists'' format leads to produce intersections of shared and
unshared OTUs between samples. However, using ``count lists'' allows to define
the amount of sequences constituting each OTUs. Thus, the produced diagram
represents the species abondance between samples.
For ``lists'' and ``count lists'' jvenn will first execute a function to compute
the intersections and display the chart. For ``intersection counts'', the
plug-in only displays graphic. The display is based on a JavaScript canvas
object allowing to export it as a PNG file. The intersection table can also be
downloaded as a CSV file. It contains a header line with the diagram area labels
and, in column, the identifiers of the elements contained in the area. These
features can be disabled by setting the
\textit
{
exporting
}
option to
\textit
{
false
}
hiding the exporting button.
represents the species abondance between samples. For ``lists'' and ``count
lists'' jvenn will first execute a function to compute the intersections and
display the chart. For ``intersection counts'', the plug-in only displays
graphic. The display is based on a JavaScript canvas object allowing to export
it as a PNG file. The intersection table can also be downloaded as a CSV file.
It contains a header line with the diagram area labels and, in column, the
identifiers of the elements contained in the area. These features can be
disabled by setting the
\textit
{
exporting
}
option to
\textit
{
false
}
hiding the
exporting button.
The Web application developer can also define the diagram display setting the
\textit
{
displayType
}
option to
\textit
{
edwards
}
or
\textit
{
classic
}
. Setting the
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment