Commit 6e02ce70 authored by Jerome Mariette's avatar Jerome Mariette
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avec abstract

parent 6d1d3770
...@@ -200,16 +200,22 @@ ...@@ -200,16 +200,22 @@
\begin{abstract} % abstract \begin{abstract} % abstract
\parttitle{Background} %if any \parttitle{Background} %if any
The amount of rich WEB applications allowing scientists to store, share and analyze data on the WEB is increasing.
This highlights the need to implement effective web-based data visualization that can easily be embeded within any
WEB site. The Venn diagram is one of the most popular chart to display shared and unshared identifiers outcoming
from biological projects.
\parttitle{Results} %if any \parttitle{Results} %if any
jvenn provides Venn diagram features that no other softwares do. It is the only library that handle up
... to 6 input lists and display Edwards-Venn diagram. Its implementation as a javascript library permits any
Currently there is no software that provides such features. developper to embed Venn diagramm visualization features within its WEB application. jvenn is fully configurable
and allows the developper to control and customize all interactions with its users.
\parttitle{Conclusions} %if any \parttitle{Conclusions} %if any
We introduce jvenn a javascript library aiming to be part of rich WEB environments helping scientists to analyse We introduce jvenn a javascript library aiming to be part of rich WEB environments helping scientists to analyse
their data. their data. The library package, comming with a full documentation and some integration examples, is freely
available at https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/venny/index.php/Accueil.
\end{abstract} \end{abstract}
...@@ -271,13 +277,12 @@ their data. ...@@ -271,13 +277,12 @@ their data.
\section*{Background} \section*{Background}
The massive amounts of data generated by biological projects makes the analysis of such projects more and Biological projects are increasingly multiplexing samples to assess differences between conditions or individuals,
more difficult. In such a context, it is important to provide researchers with effective visualization thus, it is important to provide researchers with effective visualization tools to explore and extract
tools to explore and extract relevant knowledge from these data sets. Data analysis often leads to the relevant knowledge from these data sets. Data analysis often leads to the production of biological
production of biological identifiers (gene names, operational taxonomic unit, ...) for which it is identifiers (gene names, operational taxonomic unit, ...) for which it is interesting to know intersections
interesting to know intersections between samples. One of the most popular visualization chart is the between samples. A common visualization chart is the Venn diagrams \cite{Venn1880} wich allows to identify
Venn diagrams \cite{Venn1880} wich allows to identify shared and unshared identifiers providing an insight shared and unshared identifiers providing an insight on the similarities between the lists.
on the similarities between the lists.
This type of graphs is often used to present results on WEB page. Thus, several Venn diagram applications are This type of graphs is often used to present results on WEB page. Thus, several Venn diagram applications are
availble. Some of them such as BioVenn \cite{Hulsen2008} or venny \cite{venny}, provide WEB availble. Some of them such as BioVenn \cite{Hulsen2008} or venny \cite{venny}, provide WEB
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