Commit 3d2db702 authored by Jerome Mariette's avatar Jerome Mariette
Browse files

biblio ok

parent 84cc3061
% bmc_article.bib
%
% An example of bibtex entries.
% Entries taken from BMC instructions for authors page.
% Article within a journal
@ARTICLE{Venn1880,
author = {John Venn},
title = {On the Diagrammatic and Mechanical Representation of Propositions and Reasonings.},
journal = {Philosophical Magazine and Journal of Science},
year = {1880},
volume = {9},
pages = {1-18}
}
@ARTICLE{Hulsen2008,
author = {Tim Hulsen and Jacob de Vlieg and Wynand Alkema},
title = {BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams},
journal = {BMC Genomics},
year = {2008},
volume = {9},
pages = {488}
}
@ARTICLE{Bianchia2013,
author = {L. Bianchia, A. Gagliardia, G. Campanellab, C. Landia, A. Capaldoc, A. Carleod, A. Arminia, V. De Leoe, P. Piombonif, R. Focarellic, L. Binia},
title = {A methodological and functional proteomic approach of human follicular fluid en route for oocyte quality evaluation.},
journal = {Journal of Proteomics},
year = {2013},
volume = {90},
pages = {61–76}
}
@ARTICLE{Aravindraja2013,
author = {Chairmandurai Aravindraja, Dharmaprakash Viszwapriya, Shunmugiah Karutha Pandian},
title = {Ultradeep 16S rRNA Sequencing Analysis of Geographically Similar but Diverse Unexplored Marine Samples Reveal Varied Bacterial Community Composition.},
journal = {PLOS one},
year = {2013}
}
@ARTICLE{DeuPons2014,
author = {Jordi Deu-Pons, Michael P Schroeder, and Nuria Lopez-Bigas},
title = {jHeatmap: an interactive heatmap viewer for the web.},
journal = {Bioinformatics},
year = {2014}
}
@ARTICLE{Lopes2010,
author = {Christian T. Lopes, Max Franz, Farzana Kazi, Sylva L. Donaldson, Quaid Morris, and Gary D. Bader},
title = {Cytoscape Web: an interactive web-based network browser.},
journal = {Bioinformatics},
year = {2010}
}
%%%%%%%%
% Complete book
%
@book{Edwards2004,
author = {Edwards, A.W.F.},
title = {Cogwheels of the Mind: The Story of Venn Diagrams.},
publisher = {Johns Hopkins University Press},
year = {2004},
address = {Baltimore}
}
%%%%%%%%
% Webpage Link / URL
%
@webpage{jquery,
title = {The write less, do more javascript library.},
url = {http://jquery.com/}
}
@webpage{venny,
title = {An interactive tool for comparing lists with Venn Diagrams.},
url = {http://bioinfogp.cnb.csic.es/tools/venny/index.html}
}
@webpage{canvasxpress,
title = {The canvasxpress venn diagram functionalities.},
url = {http://canvasxpress.org/venn.html}
}
@webpage{googleAPI,
title = {The Google chart API.},
url = {https://developers.google.com/chart/}
}
% This file was created with JabRef 2.7b.
% Encoding: ISO-8859-15
@BOOK{Edwards2004,
title = {Cogwheels of the Mind: The Story of Venn Diagrams.},
publisher = {Johns Hopkins University Press},
year = {2004},
author = {Edwards A.W.F.},
address = {Baltimore}
}
@ARTICLE{Aravindraja2013,
author = {Chairmandurai Aravindraja and Dharmaprakash Viszwapriya and Shunmugiah
Karutha Pandian},
title = {Ultradeep 16S rRNA Sequencing Analysis of Geographically Similar
but Diverse Unexplored Marine Samples Reveal Varied Bacterial Community
Composition.},
journal = {PLOS one},
year = {2013}
}
@ARTICLE{Bianchia2013,
author = {L. Bianchia and A. Gagliardia and G. Campanellab and C. Landia and
A. Capaldoc and A. Carleod and A. Arminia and V. De Leoe and P. Piombonif
and R. Focarellic and L. Binia},
title = {A methodological and functional proteomic approach of human follicular
fluid en route for oocyte quality evaluation.},
journal = {Journal of Proteomics},
year = {2013},
volume = {90},
pages = {61–76}
}
@ARTICLE{DeuPons2014,
author = {Jordi Deu-Pons and Michael P Schroeder and Nuria Lopez-Bigas},
title = {jHeatmap: an interactive heatmap viewer for the web.},
journal = {Bioinformatics},
year = {2014}
}
@ARTICLE{Hulsen2008,
author = {Tim Hulsen and Jacob de Vlieg and Wynand Alkema},
title = {BioVenn a web application for the comparison and visualization of
biological lists using area-proportional Venn diagrams},
journal = {BMC Genomics},
year = {2008},
volume = {9},
pages = {488}
}
@ARTICLE{Lopes2010,
author = {Christian T. Lopes and Max Franz and Farzana Kazi and Sylva L. Donaldson
and Quaid Morris and Gary D. Bader},
title = {Cytoscape Web: an interactive web-based network browser.},
journal = {Bioinformatics},
year = {2010}
}
@ARTICLE{Mariette2012,
author = {J\'{e}r\^{o}me Mariette and Fr\'{e}d\'{e}ric Escudie and Nicolas
Allias and G\'{e}rald Salin and C\'{e}line Noirot and Sylvain Thomas
and Christophe Klopp},
title = {NG6: Integrated next generation sequencing storage and processing
environment.},
journal = {BMC Genomics},
year = {2012}
}
@OTHER{Mariette,
author = {J\'{e}r\^{o}me Mariette and C\'{e}line Noirot and Ibounyamine Nabihoudine
and Philippe Bardou and Claire Hoede and Anis Djari and C\'{e}dric
Cabau and Christophe Klopp},
journal = {PLOS one},
note = {in press},
title = {RNAbrowse: RNA-seq de novo assembly results browser}
}
@ARTICLE{Venn1880,
author = {John Venn},
title = {On the Diagrammatic and Mechanical Representation of Propositions
and Reasonings.},
journal = {Philosophical Magazine and Journal of Science},
year = {1880},
volume = {9},
pages = {1-18}
}
@OTHER{canvasxpress,
title = {The canvasxpress venn diagram functionalities.},
url = {http://canvasxpress.org/venn.html}
}
@OTHER{googleAPI,
title = {The Google chart API.},
url = {https://developers.google.com/chart/}
}
@OTHER{jquery,
title = {The write less, do more javascript library.},
url = {http://jquery.com/}
}
@OTHER{venny,
title = {An interactive tool for comparing lists with Venn Diagrams.},
url = {http://bioinfogp.cnb.csic.es/tools/venny/index.html}
}
@OTHER{WallProtDB,
title = {The WallProtDB database: cell wall proteomics experimental data.},
url = {http://www.polebio.lrsv.ups-tlse.fr/WallProtDB/index.php}
}
......@@ -278,9 +278,8 @@ jvenn is a javascript library written as a jQuery plugin \cite{jquery}.
\section*{Results and Discussion}
\subsection*{How to embed jquery.venny in your own web application}
\subsection*{How to use our web application}
jvenn is already embeded within nG6 \cite{Mariette2012}, RNAbrowse \cite{Mariette} and WallProtDB \cite{WallProtDB}
WEB applications.
\section*{Conclusions}
......@@ -321,7 +320,7 @@ the system and for pointing out features worth developing.
% if your bibliography is in bibtex format, use those commands:
\bibliographystyle{bmc-mathphys} % Style BST file
\bibliography{bmc_venny} % Bibliography file (usually '*.bib' )
\bibliography{bmc_jvenn} % Bibliography file (usually '*.bib' )
% or include bibliography directly:
% \begin{thebibliography}
......
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