Commit 2c98222c authored by Jerome Mariette's avatar Jerome Mariette

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......@@ -438,22 +438,23 @@ file with all the intersection contents.
\section*{Discussion}
Fig.~\ref{fig::edwards} presents all the lists overlaps. The highest values are
located in central areas of the graph, showing that the corresponding methods
share large portions of gene lists. Finally, a list of 484 genes shared by
DESeq, TMM, UQ and FQ has been extracted. Gene G002562 was sought using the
Fig.~\ref{fig::edwards}, outputed by jvenn, presents all the lists overlaps. The
highest values are located in central areas of the graph, showing that the corresponding methods
share large portions of gene lists. Finally, taking advantage of jvenn's panel
button, a list of 484 genes shared by DESeq, TMM, UQ and FQ has been extracted.
One of the 5,277 genes was randomly choosen (G002562) and sought using jvenn
search box. It was found to be part of the five genes shared by FQ and UQ.
In the same way, the 484 genes shared by DESeq, TMM, UQ and FQ were found
in the intersection spreadsheet outputed by VENNTURE. The diagram did not allow
to search for gene G002562, which was was found using MS-Excel text search in
the intersection spreadsheet nevertheless.
The jvenn statistics show that the different methods produce gene lists with
very different sizes (minimum 417 - maximum 1,249) and that most of the genes are
shared between methods: 1,069 genes out of 1,347 are common between at least
four methods.
The same 484 genes shared by DESeq, TMM, UQ and FQ were found in the
intersection spreadsheet. The diagram did not allow to search for gene G002562,
which was was found using MS-Excel text search in the intersection spreadsheet
nevertheless.
\section*{Conclusion}
jvenn enables to compare up to six lists and updates the diagram automatically
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