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Commit 0e2353b9 authored by Jerome Mariette's avatar Jerome Mariette
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avec un debut de manual

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BMC_jvenn/bmc_jvenn.tex
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......@@ -101,7 +101,7 @@
\begin{frontmatter}
\begin{fmbox}
\dochead{Research}
\dochead{Software}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% %%
......
documentation.html
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......@@ -27,8 +27,9 @@
<div class="nav-collapse collapse">
<ul class="nav">
<li><a href="./index.html">About</a></li>
<li class="active"><a href="./documentation.html">Documentation</a></li>
<li><a href="./example.html">Example</a></li>
<li class="active"><a href="./documentation.html">Plugin documentation</a></li>
<li><a href="./usermanual.html">User manual</a></li>
<li><a target="_blank" href="https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/venny/index.php/Accueil">Sources</a></li>
<li><a href="mailto:support.genopole@toulouse.inra.fr">Contact</a></li>
</ul>
......
example.html
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......@@ -188,8 +188,9 @@
<div class="nav-collapse collapse">
<ul class="nav">
<li><a href="./index.html">About</a></li>
<li><a href="./documentation.html">Documentation</a></li>
<li class="active"><a href="./example.html">Example</a></li>
<li><a href="./documentation.html">Plugin documentation</a></li>
<li><a href="./usermanual.html">User manual</a></li>
<li><a target="_blank" href="https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/venny/index.php/Accueil">Sources</a></li>
<li><a href="mailto:support.genopole@toulouse.inra.fr">Contact</a></li>
</ul>
......@@ -200,7 +201,7 @@
<div class="container">
<!-- Main hero unit for a primary marketing message or call to action -->
<div class="hero-unit">
<h1>Hello venn!</h1>
<h1>Hello jvenn!</h1>
<p class="bodytext"> Paste up to <strong>six</strong> lists using one row per element, then click
the numbers in the <select id="venn-type" class="input-small" style="width:110px;margin-top:5px"><option value="classic">classic</option><option value="edwards">Edwards'</option></select> venn to see the results.
</p>
......
index.html
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......@@ -27,8 +27,9 @@
<div class="nav-collapse collapse">
<ul class="nav">
<li class="active"><a href="./index.html">About</a></li>
<li><a href="./documentation.html">Documentation</a></li>
<li><a href="./example.html">Example</a></li>
<li><a href="./documentation.html">Plugin documentation</a></li>
<li><a href="./usermanual.html">User manual</a></li>
<li><a target="_blank" href="https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/venny/index.php/Accueil">Sources</a></li>
<li><a href="mailto:support.genopole@toulouse.inra.fr">Contact</a></li>
</ul>
......@@ -40,7 +41,7 @@
<div class="container">
<!-- Main hero unit for a primary marketing message or call to action -->
<div class="hero-unit">
<h1>jvenn!</h1>
<h1>jvenn</h1>
<p><b>jvenn</b> is a plug-in for the <a href="http://www.jquery.com/" target="_blank">jQuery</a> Javascript
library. It is a flexible tool, based upon the venny tool first developed by J.C Oliveros (Oliveros, J.C (2007)
<a href="http://bioinfogp.cnb.csic.es/tools/venny/index.html" target="_blank">VENNY</a>, An integrative tool for
......@@ -59,14 +60,19 @@
<!-- Example row of columns -->
<div class="row">
<div class="span6">
<h2>Documentation</h2>
<p>Having problems using jvenn? Check out our documentation on how to use the script.</p>
<div class="span4">
<h2>Plugin documentation</h2>
<p>Having problems embedding jvenn in your Web application? Check out our documentation on how to include and use the library.</p>
<p><a class="btn" href="./documentation.html">Read documentation &raquo;</a></p>
</div>
<div class="span6">
<div class="span4">
<h2>User manual</h2>
<p>Having problems using jvenn? Check out our manual on how to use the Web application.</p>
<p><a class="btn" href="./usermanual.html">Read manual &raquo;</a></p>
</div>
<div class="span4">
<h2>Example</h2>
<p>Check out an example of jvenn integration providing the plugin lists as input.</p>
<p>Check out an example of jvenn integration providing lists as input.</p>
<p><a class="btn" href="./example.html">View example &raquo;</a></p>
</div>
</div>
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usermanual.html 0 → 100644
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<!DOCTYPE html>
<html lang="en">
<head>
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
<meta charset="utf-8">
<title>jvenn</title>
<!-- Les styles -->
<link href="css/bootstrap.css" rel="stylesheet" media="screen">
<link href="css/docs.css" rel="stylesheet" media="screen">
<link href="css/prettify.css" rel="stylesheet" media="screen">
<link href="css/bootstrap-responsive.css" rel="stylesheet" media="screen">
<script type="text/javascript" src="js/jquery.min.js"></script>
<script src="js/bootstrap.min.js"></script>
<script src="js/prettify.js"></script>
</head>
<body data-spy="scroll" data-target=".bs-docs-sidebar">
<div class="navbar navbar-inverse navbar-fixed-top">
<div class="navbar-inner">
<div class="container">
<button type="button" class="btn btn-navbar" data-toggle="collapse" data-target=".nav-collapse">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="brand" href="./index.html">jvenn</a>
<div class="nav-collapse collapse">
<ul class="nav">
<li><a href="./index.html">About</a></li>
<li><a href="./example.html">Example</a></li>
<li><a href="./documentation.html">Plugin documentation</a></li>
<li class="active"><a href="./usermanual.html">User manual</a></li>
<li><a target="_blank" href="https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/venny/index.php/Accueil">Sources</a></li>
<li><a href="mailto:support.genopole@toulouse.inra.fr">Contact</a></li>
</ul>
</div><!--/.nav-collapse -->
</div>
</div>
</div>
<div class="container">
<div class="row">
<div class="span3 bs-docs-sidebar">
<ul class="nav nav-list bs-docs-sidenav affix">
<li class="active"><a href="#export-to-PNG"><i class="icon-chevron-right"></i> export to PNG</a></li>
<li><a href="#add-new-identifiers"><i class="icon-chevron-right"></i> add new identifiers</a></li>
</ul>
</div>
<div class="span9">
<section id="export-to-PNG">
<div class="page-header">
<h1>Export to PNG</h1>
</div>
<p>Explication avec une image ... </p>
</section>
<section id="add-new-identifiers">
<div class="page-header">
<h1>Add new identifiers</h1>
</div>
<p>The default value is 'classic' to have a classical venn diagram to be displayed. If you want a Edwards-Venn diagram display,
just set this option to 'edwards'. Available values for this parameters are: 'classic', 'edwards'.</p>
</section>
</div>
</div>
<hr>
<footer>
<p>Copyright &copy; 2014, INRA | Designed by <a href="http://bioinfo.genotoul.fr/" target="_blank">GenoToul Bioinfo</a> team.</p>
</footer>
</div>
<script>
!function ($) {
$(function(){
window.prettyPrint && prettyPrint()
})
}(window.jQuery)
</script>
</body>
</html>
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