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% This file was created with JabRef 2.7b.
% Encoding: ISO-8859-15

@BOOK{Edwards2004,
  title = {Cogwheels of the Mind: The Story of Venn Diagrams.},
  publisher = {Johns Hopkins University Press},
  year = {2004},
  author = {Edwards A.W.F.},
  address = {Baltimore}
}

@ARTICLE{Aravindraja2013,
  author = {Chairmandurai Aravindraja and Dharmaprakash Viszwapriya and Shunmugiah
	Karutha Pandian},
  title = {Ultradeep 16S rRNA Sequencing Analysis of Geographically Similar
	but Diverse Unexplored Marine Samples Reveal Varied Bacterial Community
	Composition.},
  journal = {PLOS one},
  year = {2013}
}

@ARTICLE{Bianchia2013,
  author = {L. Bianchia and A. Gagliardia and G. Campanellab and C. Landia and
	A. Capaldoc and A. Carleod and A. Arminia and V. De Leoe and P. Piombonif
	and R. Focarellic and L. Binia},
  title = {A methodological and functional proteomic approach of human follicular
	fluid en route for oocyte quality evaluation.},
  journal = {Journal of Proteomics},
  year = {2013},
  volume = {90},
  pages = {61–76}
}

@ARTICLE{DeuPons2014,
  author = {Jordi Deu-Pons and Michael P Schroeder and Nuria Lopez-Bigas},
  title = {jHeatmap: an interactive heatmap viewer for the web.},
  journal = {Bioinformatics},
  year = {2014}
}

@ARTICLE{Hulsen2008,
  author = {Tim Hulsen and Jacob de Vlieg and Wynand Alkema},
  title = {BioVenn a web application for the comparison and visualization of
	biological lists using area-proportional Venn diagrams},
  journal = {BMC Genomics},
  year = {2008},
  volume = {9},
  pages = {488}
}

@ARTICLE{Lopes2010,
  author = {Christian T. Lopes and Max Franz and Farzana Kazi and Sylva L. Donaldson
	and Quaid Morris and Gary D. Bader},
  title = {Cytoscape Web: an interactive web-based network browser.},
  journal = {Bioinformatics},
  year = {2010}
}

@ARTICLE{Mariette2012,
  author = {J\'{e}r\^{o}me Mariette and Fr\'{e}d\'{e}ric Escudie and Nicolas
	Allias and G\'{e}rald Salin and C\'{e}line Noirot and Sylvain Thomas
	and Christophe Klopp},
  title = {NG6: Integrated next generation sequencing storage and processing
	environment.},
  journal = {BMC Genomics},
  year = {2012}
}

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@article{Westesson01032013,
	author = {Westesson, Oscar and Skinner, Mitchell and Holmes, Ian}, 
	title = {Visualizing next-generation sequencing data with JBrowse},
	volume = {14}, 
	number = {2}, 
	pages = {172-177}, 
	year = {2013}, 
	doi = {10.1093/bib/bbr078}, 
	abstract ={JBrowse is a web-based genome browser, allowing many sources of data to be visualized, interpreted and navigated in a coherent visual framework. JBrowse uses efficient data structures, pre-generation of image tiles and client-side rendering to provide a fast, interactive browsing experience. Many of JBrowse's design features make it well suited for visualizing high-volume data, such as aligned next-generation sequencing reads.}, 
	URL = {http://bib.oxfordjournals.org/content/14/2/172.abstract}, 
	eprint = {http://bib.oxfordjournals.org/content/14/2/172.full.pdf+html}, 
	journal = {Briefings in Bioinformatics} 
}

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@OTHER{Mariette,
  author = {J\'{e}r\^{o}me Mariette and C\'{e}line Noirot and Ibounyamine Nabihoudine
	and Philippe Bardou and Claire Hoede and Anis Djari and C\'{e}dric
	Cabau and Christophe Klopp},
  journal = {PLOS one},
  note = {in press},
  title = {RNAbrowse: RNA-seq de novo assembly results browser}
}

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@OTHER{SanClemente,
  author = {H. San Clemente and E. Jamet},
  journal = {Database},
  note = {in press},
  title = {WallProtDB, a database resource for plant cell wall proteomics}
}

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@ARTICLE{Venn1880,
  author = {John Venn},
  title = {On the Diagrammatic and Mechanical Representation of Propositions
	and Reasonings.},
  journal = {Philosophical Magazine and Journal of Science},
  year = {1880},
  volume = {9},
  pages = {1-18}
}

@OTHER{canvasxpress,
  title = {The canvasxpress venn diagram functionalities.},
  url = {http://canvasxpress.org/venn.html}
}

@OTHER{googleAPI,
  title = {The Google chart API.},
  url = {https://developers.google.com/chart/}
}

@OTHER{jquery,
  title = {The write less, do more javascript library.},
  url = {http://jquery.com/}
}

@OTHER{venny,
  title = {An interactive tool for comparing lists with Venn Diagrams.},
  url = {http://bioinfogp.cnb.csic.es/tools/venny/index.html}
}