jflow issueshttps://forgemia.inra.fr/genotoul-bioinfo/jflow/-/issues2018-08-07T17:04:52+02:00https://forgemia.inra.fr/genotoul-bioinfo/jflow/-/issues/1modules in weaver function2018-08-07T17:04:52+02:00Celine Noirotmodules in weaver functionInstead of updating function.py in weaver, try to overload it into jflow.Instead of updating function.py in weaver, try to overload it into jflow.Maintenancehttps://forgemia.inra.fr/genotoul-bioinfo/jflow/-/issues/2be able to set log level2018-08-13T09:52:39+02:00Gerald Salingerald.salin@inra.frbe able to set log levelset a log level in application.properties to display only logs according to this levelset a log level in application.properties to display only logs according to this levelGerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/jflow/-/issues/3add slurm config parser in jflow2018-09-07T14:26:45+02:00Gerald Salingerald.salin@inra.fradd slurm config parser in jflowin component.py.__init__ (as for sge and local)in component.py.__init__ (as for sge and local)https://forgemia.inra.fr/genotoul-bioinfo/jflow/-/issues/4Test workflow run while form has error2018-09-13T10:20:50+02:00Celine NoirotTest workflow run while form has errorIf user click on run without any change into parameters, then even if some fields are in error, the workflow is launch.If user click on run without any change into parameters, then even if some fields are in error, the workflow is launch.Maintenancehttps://forgemia.inra.fr/genotoul-bioinfo/jflow/-/issues/5Debug browse file / local file handler2018-09-13T10:23:38+02:00Celine NoirotDebug browse file / local file handlerIn web interface, when an inputfile type is selected (server file, local file, url) the handler of the button "select file" is the same for all fields.
If a fields is select as "browse file" the behaviours is not the good one, open an br...In web interface, when an inputfile type is selected (server file, local file, url) the handler of the button "select file" is the same for all fields.
If a fields is select as "browse file" the behaviours is not the good one, open an browse file on server directory, instead of local computerMaintenanceCeline NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/jflow/-/issues/6Documentation: modules2018-09-13T14:31:30+02:00Celine NoirotDocumentation: modulesAdd module documentation for advanced configuration
http://jflow.toulouse.inra.fr/app/jflow_advanced_configuration.html#workflowsAdd module documentation for advanced configuration
http://jflow.toulouse.inra.fr/app/jflow_advanced_configuration.html#workflowsMaintenancehttps://forgemia.inra.fr/genotoul-bioinfo/jflow/-/issues/7Add documentation about choises with dictionnary2018-09-13T15:46:27+02:00Celine NoirotAdd documentation about choises with dictionnarychoices={0: "Standard", 1: "Standard2", 2: "standard3"})
The first element is the value, the second is the printed value.
`
self.add_parameter("test_F1", "Choices with dict.",default=0, type="int", group="choices options",choic...choices={0: "Standard", 1: "Standard2", 2: "standard3"})
The first element is the value, the second is the printed value.
`
self.add_parameter("test_F1", "Choices with dict.",default=0, type="int", group="choices options",choices={0: "Standard", 1: "Standard2",2: "standard3"})
self.add_parameter("test_F2", "Choices with list.",default=0, type="int", group="choices options",choices=[0,1,2])
self.add_input_file("test_F3", "File choices", required=True, group="choices options", choices={"/home/cnoirot/toto":"toto","/home/cnoirot/tata":"tata","/home/cnoirot/titi":"titi"})
self.add_input_file_list("test_F4", "File list choices", required=True,
group="choices options",
choices={"/home/cnoirot/toto":"toto","/home/cnoirot/tata":"tata","/home/cnoirot/titi":"titi"})
`MaintenanceCeline NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/jflow/-/issues/8Jflow output2018-10-01T10:30:47+02:00Celine NoirotJflow outputBy default output files are accessible by default url localhost:8080.By default output files are accessible by default url localhost:8080.MaintenanceCeline NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/jflow/-/issues/9add the possibility to access server on ssl port2019-10-16T16:15:41+02:00Gerald Salingerald.salin@inra.fradd the possibility to access server on ssl portcherrypy.config.update({'server.socket_host': socket_opts[0],
'server.socket_port': socket_opts[1],
'server.ssl_module': "builtin",
'server.s...cherrypy.config.update({'server.socket_host': socket_opts[0],
'server.socket_port': socket_opts[1],
'server.ssl_module': "builtin",
'server.ssl_certificate': 'file.crt',
'server.ssl_certificate_chain':'file_chain.crt' ,
'server.ssl_private_key': 'file.key'
})
the jflow server is accessible on https://localhost:8083, mandatory if accessed from an https (443 port) websitehttps://forgemia.inra.fr/genotoul-bioinfo/jflow/-/issues/10bug when giving one file to an input file list as local file2019-10-16T16:15:08+02:00Celine Noirotbug when giving one file to an input file list as local file![image](/uploads/72a8e9d326089a1bfb2110c0bd2343cd/image.png)![image](/uploads/72a8e9d326089a1bfb2110c0bd2343cd/image.png)MaintenanceCeline NoirotCeline Noirot