Commit ec1b9212 authored by Jerome Mariette's avatar Jerome Mariette
Browse files

remove architecture

parent 160a65e1
......@@ -50,7 +50,6 @@
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">Documentation<span class="caret"></span></a>
<ul class="dropdown-menu" role="menu">
<li><a href="./jflow-core.html">Architecture</a></li>
<li><a href="./jflow-core-workflow.html">Add a workflow</a></li>
<li><a href="./jflow-core-component.html">Add a component</a></li>
<li><a href="./jflow-plugin.html">Plugin insertion</a></li>
......
......@@ -44,7 +44,6 @@
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">Documentation<span class="caret"></span></a>
<ul class="dropdown-menu" role="menu">
<li><a href="./jflow-core.html">Architecture</a></li>
<li><a href="./jflow-core-workflow.html">Add a workflow</a></li>
<li><a href="./jflow-core-component.html">Add a component</a></li>
<li><a href="./jflow-plugin.html">Plugin insertion</a></li>
......@@ -70,6 +69,32 @@
providing all workflow management systems features and benefits to your project.</p>
</div>
<div class="row">
<div class="col-lg-6">
<p>Building rich WEB environments aimed at helping scientists analyse their data is a common trend in
bioinformatics. These applications are often specialized WEB portals or generic Workflow management systems
(WMS). The first class provides multiple services and analysis tools in an integrated interface for a specific
experiment or data type. Quite often these systems hide the processing steps in the back-office. The second class,
for example Galaxy, is mainly focused on workflow creation and provides a rather poor end-user interface but enable
to combine tools and data sources as desired. We introduce jflow a fully scalable WMS that can easily be embedded
in any WEB site, providing all WMS features and benefits to your project.</p>
<p>jflow core is based upon the <a target="_blank" href="http://www.cse.nd.edu/~ccl/software/makeflow/">Makeflow</a>
workflow engine and <a target="_blank" href="https://bitbucket.org/pbui/weaver">weaver</a>, its Python API which is embedded
within jflow. Using makeflow permits to run jflow under different batch systems such as Condor, SGE, Work Queue or a single
multicore machine</p>
</div><!--/span-->
<div class="col-lg-6">
<div style="text-align: center;">
<img width="80%" src="img/jflow-global-architecture.png" class="img-rounded">
</div>
</div><!--/span-->
</div><!--/row-->
<!-- Example row of columns -->
<div class="row">
<div class="col-lg-3">
......
......@@ -38,12 +38,11 @@
<div class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li><a href="./index.html">About</a></li>
<li class="active"><a href="./jflow-install.html">Install</a></li>
<li><a href="./jflow-install.html">Install</a></li>
<li><a href="./jflow-quickstart.html">Quick start</a></li>
<li class="dropdown">
<li class="dropdown active">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">Documentation<span class="caret"></span></a>
<ul class="dropdown-menu" role="menu">
<li><a href="./jflow-core.html">Architecture</a></li>
<li><a href="./jflow-core-workflow.html">Add a workflow</a></li>
<li><a href="./jflow-core-component.html">Add a component</a></li>
<li><a href="./jflow-plugin.html">Plugin insertion</a></li>
......
......@@ -46,7 +46,6 @@
<li class="dropdown active">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">Documentation<span class="caret"></span></a>
<ul class="dropdown-menu" role="menu">
<li><a href="./jflow-core.html">Architecture</a></li>
<li><a href="./jflow-core-workflow.html">Add a workflow</a></li>
<li class="active"><a href="./jflow-core-component.html">Add a component</a></li>
<li><a href="./jflow-plugin.html">Plugin insertion</a></li>
......
......@@ -46,7 +46,6 @@
<li class="dropdown active">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">Documentation<span class="caret"></span></a>
<ul class="dropdown-menu" role="menu">
<li><a href="./jflow-core.html">Architecture</a></li>
<li class="active"><a href="./jflow-core-workflow.html">Add a workflow</a></li>
<li><a href="./jflow-core-component.html">Add a component</a></li>
<li><a href="./jflow-plugin.html">Plugin insertion</a></li>
......
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1">
<title>Jflow</title>
<!-- Bootstrap core CSS -->
<link href="css/bootstrap.min.css" rel="stylesheet">
<!-- Bootstrap theme -->
<link href="css/bootstrap-theme.min.css" rel="stylesheet">
<!-- Custom styles for this template -->
<link href="css/theme.css" rel="stylesheet">
<!-- Highlight code -->
<link href="css/tomorrow-night-eighties.css" rel="stylesheet">
<!-- HTML5 shim and Respond.js IE8 support of HTML5 elements and media queries -->
<!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.2/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
</head>
<body role="document">
<!-- Fixed navbar -->
<div class="navbar navbar-inverse navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target=".navbar-collapse">
<span class="sr-only">Toggle navigation</span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="./index.html">Jflow</a>
</div>
<div class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li><a href="./index.html">About</a></li>
<li><a href="./jflow-install.html">Install</a></li>
<li><a href="./jflow-quickstart.html">Quick start</a></li>
<li class="dropdown active">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">Documentation<span class="caret"></span></a>
<ul class="dropdown-menu" role="menu">
<li class="active"><a href="./jflow-core.html">Architecture</a></li>
<li><a href="./jflow-core-workflow.html">Add a workflow</a></li>
<li><a href="./jflow-core-component.html">Add a component</a></li>
<li><a href="./jflow-plugin.html">Plugin insertion</a></li>
<li><a href="./jflow-type.html">Add a data type</a></li>
<li><a href="./jflow-format.html">Add a file format</a></li>
<li><a href="./jflow-advanced-configuration.html">Advanced configuration</a></li>
</ul>
</li>
<li><a href="./example1.html">Example</a></li>
<li><a target="_blank" href="https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/jflow/index.php/Accueil">Sources</a></li>
<li><a href="mailto:support.genopole@toulouse.inra.fr">Contact</a></li>
</ul>
</div><!--/.nav-collapse -->
</div>
</div>
<div class="container">
<div class="row">
<!--Nav Bar -->
<nav class="col-xs-3 bs-docs-sidebar">
<ul id="sidebar" class="nav nav-stacked fixed">
<li><a href="#introduction" class="active">Introduction</a></li>
<li><a href="#architecture">Global architecture</a></li>
</ul>
</nav>
<div class="col-xs-12 col-sm-9">
<section id="introduction" class="group">
<h1 class="page-header">Introduction</h1>
<p>Building rich WEB environments aimed at helping scientists analyse their data is a common trend in
bioinformatics. These applications are often specialized WEB portals or generic Workflow management systems
(WMS). The first class provides multiple services and analysis tools in an integrated interface for a specific
experiment or data type. Quite often these systems hide the processing steps in the back-office. The second class,
for example Galaxy, is mainly focused on workflow creation and provides a rather poor end-user interface but enable
to combine tools and data sources as desired. We introduce jflow a fully scalable WMS that can easily be embedded
in any WEB site, providing all WMS features and benefits to your project.</p>
</section>
<section id="architecture" class="group">
<h1 class="page-header">Global architecture</h1>
<p>jflow core is based upon the <a target="_blank" href="http://www.cse.nd.edu/~ccl/software/makeflow/">Makeflow</a>
workflow engine and <a target="_blank" href="https://bitbucket.org/pbui/weaver">weaver</a>, its Python API which is embedded
within jflow. Using makeflow permits to run jflow under different batch systems such as Condor, SGE, Work Queue or a single
multicore machine</p>
<div class="bs-docs-example" style="text-align: center;">
<img width="80%" src="img/jflow-global-architecture.png" class="img-rounded">
</div>
</section>
</div><!--/span-->
</div><!--/row-->
<hr>
<footer>
<div class="container" style="text-align: center;">
<p>Copyright © 2015, INRA | Designed by <a target="_blank" href="http://bioinfo.genotoul.fr/">GenoToul Bioinfo platform</a> and <a target="_blank" href="http://www.sigenae.org/">Sigenae platform</a>.</p>
</div>
</footer>
</div><!--/.container-->
<!-- Bootstrap core JavaScript
================================================== -->
<!-- Placed at the end of the document so the pages load faster -->
<script src="js/jquery.min.js"></script>
<script src="js/bootstrap.min.js"></script>
<!-- <script src="../../assets/js/docs.min.js"></script> -->
<!-- IE10 viewport hack for Surface/desktop Windows 8 bug -->
<!-- <script src="../../assets/js/ie10-viewport-bug-workaround.js"></script> -->
<!-- Highlight code -->
<script src="js/highlight.pack.js"></script>
<script>hljs.initHighlightingOnLoad();</script>
<script type='text/javascript'>
$('body').scrollspy({
target: '.bs-docs-sidebar',
offset: 150
});
</script>
</body>
</html>
......@@ -46,7 +46,6 @@
<li class="active dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">Documentation<span class="caret"></span></a>
<ul class="dropdown-menu" role="menu">
<li><a href="./jflow-core.html">Architecture</a></li>
<li><a href="./jflow-core-workflow.html">Add a workflow</a></li>
<li><a href="./jflow-core-component.html">Add a component</a></li>
<li><a href="./jflow-plugin.html">Plugin insertion</a></li>
......
......@@ -46,7 +46,6 @@
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">Documentation<span class="caret"></span></a>
<ul class="dropdown-menu" role="menu">
<li><a href="./jflow-core.html">Architecture</a></li>
<li><a href="./jflow-core-workflow.html">Add a workflow</a></li>
<li><a href="./jflow-core-component.html">Add a component</a></li>
<li><a href="./jflow-plugin.html">Plugin insertion</a></li>
......
......@@ -46,7 +46,6 @@
<li class="dropdown active">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">Documentation<span class="caret"></span></a>
<ul class="dropdown-menu" role="menu">
<li><a href="./jflow-core.html">Architecture</a></li>
<li><a href="./jflow-core-workflow.html">Add a workflow</a></li>
<li><a href="./jflow-core-component.html">Add a component</a></li>
<li class="active"><a href="./jflow-plugin.html">Plugin insertion</a></li>
......
......@@ -46,7 +46,6 @@
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">Documentation<span class="caret"></span></a>
<ul class="dropdown-menu" role="menu">
<li><a href="./jflow-core.html">Architecture</a></li>
<li><a href="./jflow-core-workflow.html">Add a workflow</a></li>
<li><a href="./jflow-core-component.html">Add a component</a></li>
<li><a href="./jflow-plugin.html">Plugin insertion</a></li>
......
......@@ -46,7 +46,6 @@
<li class="dropdown active">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">Documentation<span class="caret"></span></a>
<ul class="dropdown-menu" role="menu">
<li><a href="./jflow-core.html">Architecture</a></li>
<li><a href="./jflow-core-workflow.html">Add a workflow</a></li>
<li><a href="./jflow-core-component.html">Add a component</a></li>
<li><a href="./jflow-plugin.html">Plugin insertion</a></li>
......
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