Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
genotoul-bioinfo
jflow
Commits
ea439a4b
Commit
ea439a4b
authored
Mar 30, 2017
by
Floreal Cabanettes
Browse files
Fix fasta checker too much memory usage
parent
ce56e260
Changes
1
Hide whitespace changes
Inline
Side-by-side
workflows/formats.py
View file @
ea439a4b
...
...
@@ -38,7 +38,7 @@ def fastq(ifile):
def
fasta
(
ifile
):
try
:
reader
=
seqio
.
FastaReader
(
ifile
,
wholefile
=
Tru
e
)
reader
=
seqio
.
FastaReader
(
ifile
,
wholefile
=
Fals
e
)
nb_seq
=
0
for
id
,
desc
,
seq
,
qualities
in
reader
:
nb_seq
+=
1
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment