Fix fasta checker too much memory usage

ea439a4b · Floreal Cabanettes · ce56e260 · ea439a4b
Commit ea439a4b authored Mar 30, 2017 by Floreal Cabanettes
--- a/workflows/formats.py
+++ b/workflows/formats.py
@@ -38,7 +38,7 @@ def fastq(ifile):
    
 def fasta(ifile):
    try:
-        reader = seqio.FastaReader(ifile, wholefile=True)
+        reader = seqio.FastaReader(ifile, wholefile=False)
        nb_seq = 0
        for id, desc, seq, qualities in reader:
            nb_seq += 1