make hierarchie OK

src/jflow/component.py

@@ -82,6 +82,9 @@ class Component(object):
             except: pass
         # otherwise, add it to the class itself
         else:
+            new_param.component_nameid = self.get_nameid()
+            if default.__class__.__name__ == "OutputFileList" or default.__class__.__name__ == "OutputFile":
+                new_param.parent_component_nameid = default.component_nameid
             self.params_order.append(name)
             self.__setattr__(name, new_param)
     
@@ -119,6 +122,7 @@ class Component(object):
             except: pass
         # otherwise, add it to the class itself
         else:
+            new_param.component_nameid = self.get_nameid()
             self.params_order.append(name)
             self.__setattr__(name, new_param)
     

src/jflow/parameter.py

@@ -296,9 +296,11 @@ class AbstractParameter(object):
         return self.type.__name__
     
     
-class AbstractFile(object):
+class AbstractIOFile(object):
+    
     def __init__(self, file_format="any"):
         self.file_format = file_format
+        self.component_nameid = None
         self.parent_component_nameid = None
 
 
@@ -384,7 +386,7 @@ class Parameter(str, AbstractParameter):
                                    action="store", sub_parameters=sub_parameters, group=group, display_name=display_name)
         
 
-class InputFile(Parameter, AbstractFile):
+class InputFile(Parameter, AbstractIOFile):
     
     def __new__(self, name, help, file_format="any", default="", type="localfile", choices=None, 
                 required=False, flag=None, group="default", display_name=None):
@@ -401,12 +403,12 @@ class InputFile(Parameter, AbstractFile):
     
     def __init__(self, name, help, file_format="any", default="", type="localfile", choices=None, 
                 required=False, flag=None, group="default", display_name=None):
-        AbstractFile.__init__(self, file_format)
+        AbstractIOFile.__init__(self, file_format)
         Parameter.__init__(self, name, help, flag=flag, type=type, choices=choices, 
                            required=required, group=group, display_name=display_name)
 
 
-class OutputFile(Parameter, AbstractFile):
+class OutputFile(Parameter, AbstractIOFile):
     
     def __new__(self, name, help, file_format="any", default="", choices=None, 
                 required=False, flag=None, group="default", display_name=None):
@@ -414,7 +416,7 @@ class OutputFile(Parameter, AbstractFile):
     
     def __init__(self, name, help, file_format="any", default="", choices=None, 
                 required=False, flag=None, group="default", display_name=None):
-        AbstractFile.__init__(self, file_format)
+        AbstractIOFile.__init__(self, file_format)
         Parameter.__init__(self, name, help, flag=flag, type="localfile", choices=choices, 
                            required=required, group=group, display_name=display_name)
 
@@ -432,7 +434,7 @@ class ParameterList(list, AbstractParameter):
             return list.__init__(self, default)
         
 
-class InputFileList(ParameterList, AbstractFile):
+class InputFileList(ParameterList, AbstractIOFile):
     
     def __init__(self, name, help, file_format="any", default=None, type="localfile", choices=None, 
                  required=False, flag=None, group="default", display_name=None):
@@ -447,7 +449,7 @@ class InputFileList(ParameterList, AbstractFile):
             raise ValueError("InputFile.__new__: wrong type provided: '"+type2test+"', this should be choosen between '" 
                              + "', '".join(INPUTFILE_TYPES)+"'")
         
-        AbstractFile.__init__(self, file_format)
+        AbstractIOFile.__init__(self, file_format)
         ParameterList.__init__(self, name, help, flag=flag, type=type, choices=choices, 
                                required=required, group=group, display_name=display_name)
         if default.__class__.__name__ == "str":
@@ -458,12 +460,12 @@ class InputFileList(ParameterList, AbstractFile):
             return list.__init__(self, default)
 
 
-class OutputFileList(ParameterList, AbstractFile):
+class OutputFileList(ParameterList, AbstractIOFile):
     
     def __init__(self, name, help, file_format="any", default=None, choices=None, 
                  required=False, flag=None, group="default", display_name=None):
         if default == None: default = []
-        AbstractFile.__init__(self, file_format)
+        AbstractIOFile.__init__(self, file_format)
         ParameterList.__init__(self, name, help, flag=flag, type="localfile", choices=choices, 
                                required=required, group=group, display_name=display_name)
         if default.__class__.__name__ == "str":