Commit bf5b8065 authored by Jerome Mariette's avatar Jerome Mariette
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parent a8d1eca7
......@@ -15,7 +15,8 @@
# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
[global]
makeflow = /usr/bin/makeflow
# uncomment and set if not in the PATH
#makeflow = /usr/bin/makeflow
# batch system type: local, condor, sge, moab, cluster, wq, hadoop, mpi-queue
batch_system_type = local
# add these options to all batch submit files
......@@ -27,19 +28,20 @@ server_socket_port = 8080
[storage]
# where should be written the log file
log_file = /home/jmariette/scratch/work/jflow.log
log_file = <path>/jflow.log
# Where should the pipelines write results, should be accessible
# by all cluster nodes
work_directory = /home/jmariette/scratch/work
work_directory = <path>/work
# Where should the pipelines write temporary files, should be
# accessible by all cluster nodes
tmp_directory = /home/jmariette/scratch/tmp
tmp_directory = <path>/tmp
[softwares]
blastall = /usr/bin/blastall
formatdb = /usr/bin/formatdb
sfffile = /usr/bin/sfffile
fastqc = /usr/bin/fastqc
runAssembly = /usr/bin/runAssembly
bwa = /usr/bin/bwa
samtools = /usr/bin/samtools
\ No newline at end of file
# uncomment and set if not in the PATH
#blastall = /usr/bin/blastall
#formatdb = /usr/bin/formatdb
#sfffile = /usr/bin/sfffile
#fastqc = /usr/bin/fastqc
#runAssembly = /usr/bin/runAssembly
#bwa = /usr/bin/bwa
#samtools = /usr/bin/samtools
\ No newline at end of file
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