highlight ini !

docs/jflow-core-component.html

@@ -127,12 +127,12 @@
 ├── src/
 ├── workflows/
 │   ├── myWorkflowName/
-│   │   ├── components/              ** workflow specific components **
-│   │   │   └── myComponentName.py   ** the component code **
+│   │   ├── components/              [ workflow specific components ]
+│   │   │   └── myComponentName.py   [ the component code ]
 │   │   └── __init__.py
-│   ├── components/                  ** general components **
+│   ├── components/                  [ general components ]
 │   │   ├── __init__.py
-│   │   └── myComponentName.py       ** the component code **
+│   │   └── myComponentName.py       [ the component code ]
 │   ├── extparsers/
 │   ├── __init__.py
 │   ├── formats.py
@@ -791,8 +791,8 @@ self.add_output_file_list("sais", "sai files",
 │   ├── components/ 
 │   ├── extparsers/
 │   │   ├── __init__.py
-│   │   ├── yourParser.py   ** the code for your parser**
-│   │   └── mobyle.py       ** default mobyle component parser**
+│   │   ├── yourParser.py   [ the code for your parser ]
+│   │   └── mobyle.py       [ default mobyle component parser ]
 │   ├── __init__.py
 │   ├── formats.py
 │   └── types.py

docs/jflow-core-workflow.html

@@ -94,16 +94,16 @@
 		    		<li>a <code>bin</code> folder with the binaries used in the workflow.</li>
 		    	</ul>
 		    	
-		    	<pre class="pre-hl "><code class="text">jflow/
+		    	<pre class="pre-hl "><code class="ini">jflow/
 ├── bin/
 ├── docs/
 ├── src/
 ├── workflows/
-│   ├── myworkflow/      ** the new workflow package **
-│   │   ├── components/  ** specific components **
-│   │   ├── lib/         ** specific libraries **
-│   │   ├── bin/         ** specific binairies **
-│   │   └── __init__.py  ** the workflow implementation **
+│   ├── myworkflow/       [ the new workflow package ]
+│   │   ├── components/   [ specific components ]
+│   │   ├── lib/          [ specific libraries ]
+│   │   ├── bin/          [ specific binairies ]
+│   │   └── __init__.py   [ the workflow implementation ]
 │   ├── components/
 │   ├── extparsers/
 │   ├── __init__.py
@@ -173,8 +173,7 @@ class MyWorkflow (Workflow):
     self.add_parameter("sequencer",
        	"The sequencer type.", 
        	choices = ["HiSeq2000", "ILLUMINA","SLX","SOLEXA","454","UNKNOWN"], 
-       	default="HiSeq2000")
-								</code></pre>
+       	default="HiSeq2000")</code></pre>
 					    	</div>
 			    	
 			    				<h4>Options</h4>					
@@ -423,8 +422,7 @@ class MyWorkflow (Workflow):
 self.add_input_file("R1", "Path to R1 file.", required=True, add_to="library")
 self.add_input_file("R2", "Path to R2 file.", add_to="library")
 self.add_parameter("sequencer", "The sequencer type.", choices=["HiSeq2000", 
-    "ILLUMINA", "UNKNOWN"], default="HiSeq2000", add_to="library")
-							</code></pre>
+    "ILLUMINA", "UNKNOWN"], default="HiSeq2000", add_to="library")</code></pre>
 				    	</div>
 				    	
 				    	<h3>how to populate a multiple parameter</h3>