RAPPEL : Opération de maintenance > ForgeMIA indisponible le 20 Janvier entre 7h et 12h

Commit afc3629c authored by Philippe Bardou's avatar Philippe Bardou
Browse files

highlight ini !

parent 751c8808
......@@ -127,12 +127,12 @@
├── src/
├── workflows/
│ ├── myWorkflowName/
│ │ ├── components/ ** workflow specific components **
│ │ │ └── myComponentName.py ** the component code **
│ │ ├── components/ [ workflow specific components ]
│ │ │ └── myComponentName.py [ the component code ]
│ │ └── __init__.py
│ ├── components/ ** general components **
│ ├── components/ [ general components ]
│ │ ├── __init__.py
│ │ └── myComponentName.py ** the component code **
│ │ └── myComponentName.py [ the component code ]
│ ├── extparsers/
│ ├── __init__.py
│ ├── formats.py
......@@ -791,8 +791,8 @@ self.add_output_file_list("sais", "sai files",
│ ├── components/
│ ├── extparsers/
│ │ ├── __init__.py
│ │ ├── yourParser.py ** the code for your parser**
│ │ └── mobyle.py ** default mobyle component parser**
│ │ ├── yourParser.py [ the code for your parser ]
│ │ └── mobyle.py [ default mobyle component parser ]
│ ├── __init__.py
│ ├── formats.py
│ └── types.py
......
......@@ -94,16 +94,16 @@
<li>a <code>bin</code> folder with the binaries used in the workflow.</li>
</ul>
<pre class="pre-hl "><code class="text">jflow/
<pre class="pre-hl "><code class="ini">jflow/
├── bin/
├── docs/
├── src/
├── workflows/
│ ├── myworkflow/ ** the new workflow package **
│ │ ├── components/ ** specific components **
│ │ ├── lib/ ** specific libraries **
│ │ ├── bin/ ** specific binairies **
│ │ └── __init__.py ** the workflow implementation **
│ ├── myworkflow/ [ the new workflow package ]
│ │ ├── components/ [ specific components ]
│ │ ├── lib/ [ specific libraries ]
│ │ ├── bin/ [ specific binairies ]
│ │ └── __init__.py [ the workflow implementation ]
│ ├── components/
│ ├── extparsers/
│ ├── __init__.py
......@@ -173,8 +173,7 @@ class MyWorkflow (Workflow):
self.add_parameter("sequencer",
"The sequencer type.",
choices = ["HiSeq2000", "ILLUMINA","SLX","SOLEXA","454","UNKNOWN"],
default="HiSeq2000")
</code></pre>
default="HiSeq2000")</code></pre>
</div>
<h4>Options</h4>
......@@ -423,8 +422,7 @@ class MyWorkflow (Workflow):
self.add_input_file("R1", "Path to R1 file.", required=True, add_to="library")
self.add_input_file("R2", "Path to R2 file.", add_to="library")
self.add_parameter("sequencer", "The sequencer type.", choices=["HiSeq2000",
"ILLUMINA", "UNKNOWN"], default="HiSeq2000", add_to="library")
</code></pre>
"ILLUMINA", "UNKNOWN"], default="HiSeq2000", add_to="library")</code></pre>
</div>
<h3>how to populate a multiple parameter</h3>
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment