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genotoul-bioinfo
jflow
Commits
925c3416
Commit
925c3416
authored
Nov 23, 2016
by
Floreal Cabanettes
Browse files
Update the doc
parent
17048d13
Changes
1
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docs/jflow_core_workflow.html
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925c3416
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@@ -482,8 +482,6 @@ class MyWorkflow (Workflow):
Example: RequiredIf?ANY[adapter_1!="AATGC",adapter_2=*,gtf_file=None]
</li>
<li><strong>
ActivateIf:
</strong>
parameter is enabled only if other parameters have some values.
<br/>
<em>
Syntax (like RequiredIf rule):
<br/></br:>
ActivateIf?(ANY|ALL)[param_1=value1,param_2=value2,...]
</em>
(all conditions or any condition)
</li>
<li><strong>
UniqueAll:
</strong>
the file given for this parameter must be not given for another one
</li>
<em>
Syntax: Unique
</em>
</ul>
</td>
</tr>
...
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@@ -497,8 +495,6 @@ class MyWorkflow (Workflow):
<p>
This method takes the same arguments as
<code>
add_input_file()
</code>
. However, adding this parameter,
the final user will be allowed to provide multiple files and the object attribut
<code>
self.parameter_name
</code>
will be
settled as a Python list.
</p>
<p>
The only rule available for this function is
<code>
Unique
<code>
: a file must be provided only once.
</p>
<h3>
add_input_directory()
</h3>
<p>
...
...
@@ -745,10 +741,8 @@ self.add_parameter("sequencer", "The sequencer type.", choices=["HiSeq2000",
<td>
Define custom rules on the parameter. Rules are separated by a ";"
<br/>
Available rules:
<br/>
<ul>
<li><strong>
Exclude:
</strong>
exclude parameters. If one is given, the other must be not given.
<br/>
<em>
Syntax: Exclude=param1,param2,...
</em></li>
<li><strong>
ToBeRequired:
</strong>
require other parameters if parameter is given.
<br/>
<em>
Syntax: ToBeRequired=param1,param2,...
</em></li>
<li><strong>
FilesUnique:
</strong>
all files in all sub-parameters must be unique.
<br/>
<em>
Syntax: FilesUnique
</em></li>
</ul>
</td>
</tr>
...
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