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workflows/alignment/__init__.py

@@ -25,12 +25,10 @@ class Alignment (Workflow):
         return "Align reads against a reference genome"
 
     def define_parameters(self, function="process"):
-        self.add_input_file_list("read_1", "Which read1 files should be used", type="browsefile", file_format="fastq", required=True)
+        self.add_input_file_list("read_1", "Which read1 files should be used", file_format="fastq", required=True)
         self.add_input_file_list("read_2", "Which read2 files should be used (if single end, leave empty)", file_format="fastq")
         self.add_input_file("reference_genome", "Which genome should the read being align on", required=True, file_format="fasta")
-        self.add_parameter("test", "Whin", type="bool")
-        
-        
+
     def process(self):        
         # index the reference genome
         bwaindex = self.add_component("BWAIndex", [self.reference_genome])