Commit 848fd892 authored by Jerome Mariette's avatar Jerome Mariette
Browse files

No commit message

No commit message
parent 397f3cb0
......@@ -25,12 +25,10 @@ class Alignment (Workflow):
return "Align reads against a reference genome"
def define_parameters(self, function="process"):
self.add_input_file_list("read_1", "Which read1 files should be used", type="browsefile", file_format="fastq", required=True)
self.add_input_file_list("read_1", "Which read1 files should be used", file_format="fastq", required=True)
self.add_input_file_list("read_2", "Which read2 files should be used (if single end, leave empty)", file_format="fastq")
self.add_input_file("reference_genome", "Which genome should the read being align on", required=True, file_format="fasta")
self.add_parameter("test", "Whin", type="bool")
def process(self):
# index the reference genome
bwaindex = self.add_component("BWAIndex", [self.reference_genome])
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment