Commit 59528fd3 authored by Floreal Cabanettes's avatar Floreal Cabanettes
Browse files

Restore unwanted commit

parent 011f3a9e
......@@ -17,7 +17,7 @@
[global]
# uncomment and set if not in the PATH, should be version >= 4.4.3
makeflow = /home/fcabanettes/cctools6/bin/makeflow
#makeflow = /usr/bin/makeflow
# batch system type: local, condor, sge, moab, cluster, wq, hadoop, mpi-queue
batch_system_type = local
# add these options to all batch submit files
......@@ -47,20 +47,19 @@ from_password =
#message =
[storage]
# In this section, ###USER### (if it's used) is replaced by $USER environment variable.
# where should be written the log file
log_file = /home/fcabanettes/jflow-work/jflow.log
log_file = <path>/jflow.log
# Where should the pipelines write results, should be accessible
# by all cluster nodes
work_directory = /home/fcabanettes/jflow-work/work
work_directory = <path>/work
# Where should the pipelines write temporary files, should be
# accessible by all cluster nodes
tmp_directory = /home/fcabanettes/jflow-work/tmp
tmp_directory = <path>/tmp
[softwares]
# uncomment and set if not in the PATH
bwa = /usr/bin/bwa
cutadapt = /usr/local/bin/cutadapt
STAR = /usr/bin/STAR
#bwa = /usr/bin/bwa
#samtools = /usr/bin/samtools
# Set cluster parameters of some components
......
......@@ -114,7 +114,6 @@ class MultiMap(AbstractionWargs):
@cache_generation
def _generate(self):
print("ARGS: " + str(self.arguments))
with self:
debug(D_ABSTRACTION, 'Generating Abstraction {0}'.format(self))
......
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