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genotoul-bioinfo
jflow
Commits
3a7c680f
Commit
3a7c680f
authored
Sep 03, 2014
by
Jerome Mariette
Browse files
ok for multiparameter
parent
ebee8531
Changes
1
Hide whitespace changes
Inline
Side-by-side
src/jflow/workflow.py
View file @
3a7c680f
...
...
@@ -249,9 +249,14 @@ class Workflow(threading.Thread):
sub_args
[
sarg
[
0
]]
=
sarg
[
1
]
for
sub_param
in
param
.
sub_parameters
:
if
sub_args
.
has_key
(
sub_param
.
flag
):
self
.
__getattribute__
(
param
.
name
)[
sub_param
.
name
]
=
sub_args
[
sub_param
.
flag
]
value
=
sub_args
[
sub_param
.
flag
]
else
:
self
.
__getattribute__
(
param
.
name
)[
sub_param
.
name
]
=
sub_param
.
default
value
=
sub_param
.
default
if
sub_param
.
__class__
==
InputFile
:
value
=
sub_param
.
prepare_input_file
(
value
)
elif
sub_param
.
__class__
==
InputFileList
:
value
=
sub_param
.
prepare_input_files
(
value
)
self
.
__getattribute__
(
param
.
name
)[
sub_param
.
name
]
=
value
elif
param
.
__class__
==
MultiParameterList
:
final_vals
=
[]
for
sargs
in
args
[
param
.
name
]:
...
...
@@ -260,9 +265,14 @@ class Workflow(threading.Thread):
sub_args
[
sarg
[
0
]]
=
sarg
[
1
]
for
sub_param
in
param
.
sub_parameters
:
if
sub_args
.
has_key
(
sub_param
.
flag
):
final_sub_args
[
sub_param
.
name
]
=
sub_args
[
sub_param
.
flag
]
value
=
sub_args
[
sub_param
.
flag
]
else
:
final_sub_args
[
sub_param
.
name
]
=
sub_param
.
default
value
=
sub_param
.
default
if
sub_param
.
__class__
==
InputFile
:
value
=
sub_param
.
prepare_input_file
(
value
)
elif
sub_param
.
__class__
==
InputFileList
:
value
=
sub_param
.
prepare_input_files
(
value
)
final_sub_args
[
sub_param
.
name
]
=
value
final_vals
.
append
(
final_sub_args
)
self
.
__setattr__
(
param
.
name
,
final_vals
)
...
...
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