multiparam close to be ok

src/jflow/parameter.py

@@ -249,7 +249,7 @@ class AbstractParameter(object):
                 self.action = MiltipleAction
             self.global_help = self.help
             self.help = self.global_help + " (" + param_flag + "=<" + param.type.__name__.upper() + ">)"
-            self.default = {param_flag: param.default}
+            self.default = {param.name: param.default}
             self.nargs = "+"
         elif self.type.__class__ == MultipleParameters:
             self.type.types[param_flag] = param.type
@@ -259,7 +259,8 @@ class AbstractParameter(object):
             if param.required:
                 self.type.required.append(param_flag)
             self.help = self.global_help + self.type.get_help()
-            self.default[param_flag] = param.default
+            self.default[param.name] = param.default
+        param.flag = param_flag
         self.sub_parameters.append(param)
     
     

src/jflow/workflow.py

@@ -203,7 +203,16 @@ class Workflow(threading.Thread):
                     self.__setattr__(param.name, new_param)
                 elif param.__class__ ==  ParameterList or param.__class__ ==  InputFileList:
                     self.__getattribute__(param.name).extend(args[param.name])
-
+                elif param.__class__ == MultiParameter:
+                    sub_args = {}
+                    for sarg in args[param.name]:
+                        sub_args[sarg[0]] = sarg[1]
+                    for sub_param in param.sub_parameters:
+                        if sub_args.has_key(sub_param.flag):
+                            self.__getattribute__(param.name)[sub_param.name] = sub_args[sub_param.flag]
+                        else:
+                            self.__getattribute__(param.name)[sub_param.name] = self.__getattribute__(param.name).default[sub_param.name]
+                            
     """
     def _get_from_config(self, parameters_section):
         reader = ConfigParser()