Commit 1f321774 authored by Floreal Cabanettes's avatar Floreal Cabanettes
Browse files

Update doc

parent 22d365e7
...@@ -289,6 +289,13 @@ BWAmem.batch_options = "mem=10G cpu=4"</code></pre> ...@@ -289,6 +289,13 @@ BWAmem.batch_options = "mem=10G cpu=4"</code></pre>
<pre class="pre-hl "><code class="ini">[components] <pre class="pre-hl "><code class="ini">[components]
BWAIndex.batch_options = -l mem=1G -l h_vmem=1G -q myflowq BWAIndex.batch_options = -l mem=1G -l h_vmem=1G -q myflowq
BWAmem.batch_options = -l mem=10G -l h_vmem=10G -q myflow2q</code></pre> BWAmem.batch_options = -l mem=10G -l h_vmem=10G -q myflow2q</code></pre>
<h3>Load modules</h3>
<p>If a component required a module load, it can be set here. Module load will be run on the computing node, just before job execution.</code></p>
<pre class="pre-hl "><code class="ini">[components]
markduplicates.genomestrip.modules = bioinfo/Java8
BWAmem.modules = bioinfo/bwa-0.7.15</code></pre>
</section> </section>
...@@ -348,4 +355,4 @@ phix_db = /path/to/phi.fa ...@@ -348,4 +355,4 @@ phix_db = /path/to/phi.fa
}); });
</script> </script>
</body> </body>
</html> </html>
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