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genotoul-bioinfo
jflow
Commits
1f321774
Commit
1f321774
authored
Aug 07, 2018
by
Floreal Cabanettes
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Update doc
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22d365e7
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docs/jflow_advanced_configuration.html
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@@ -289,6 +289,13 @@ BWAmem.batch_options = "mem=10G cpu=4"</code></pre>
<pre
class=
"pre-hl "
><code
class=
"ini"
>
[components]
BWAIndex.batch_options = -l mem=1G -l h_vmem=1G -q myflowq
BWAmem.batch_options = -l mem=10G -l h_vmem=10G -q myflow2q
</code></pre>
<h3>
Load modules
</h3>
<p>
If a component required a module load, it can be set here. Module load will be run on the computing node, just before job execution.
</code></p>
<pre
class=
"pre-hl "
><code
class=
"ini"
>
[components]
markduplicates.genomestrip.modules = bioinfo/Java8
BWAmem.modules = bioinfo/bwa-0.7.15
</code></pre>
</section>
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@@ -348,4 +355,4 @@ phix_db = /path/to/phi.fa
});
</script>
</body>
</html>
\ No newline at end of file
</html>
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