Commit 163df782 authored by Jerome Mariette's avatar Jerome Mariette
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parent 2c4106b1
......@@ -127,7 +127,7 @@ if __name__ == '__main__':
subparsers = parser.add_subparsers(title='Available sub commands')
# Add rerun workflow availability
sub_parser = subparsers.add_parser("rerun", help="rerun a specific workflow")
sub_parser = subparsers.add_parser("rerun", help="Rerun a specific workflow")
sub_parser.add_argument("--workflow-id", type=str, help="Which workflow should be rerun",
required=True, dest="workflow_id")
sub_parser.set_defaults(cmd_object="rerun")
......@@ -139,7 +139,7 @@ if __name__ == '__main__':
sub_parser.set_defaults(cmd_object="execution_graph")
# Add status workflow availability
sub_parser = subparsers.add_parser("status", help="monitor a specific workflow")
sub_parser = subparsers.add_parser("status", help="Monitor a specific workflow")
sub_parser.add_argument("--workflow-id", type=str, help="Which workflow status should be displayed",
default=None, dest="workflow_id")
sub_parser.add_argument("--all", action="store_true", help="Display all workflows status",
......
......@@ -21,7 +21,7 @@ from jflow.parameter import InputFileList, InputFile
class Alignment (Workflow):
def get_description(self):
return "align reads against a reference genome"
return "Align reads against a reference genome"
def define_parameters(self, function="process"):
self.add_input_file("read_1", "Which read1 files should be used", required=True, is_list=True)
......
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