No commit message

No commit message

bin/jflow_cli.py

@@ -127,7 +127,7 @@ if __name__ == '__main__':
     subparsers = parser.add_subparsers(title='Available sub commands')
     
     # Add rerun workflow availability
-    sub_parser = subparsers.add_parser("rerun", help="rerun a specific workflow")
+    sub_parser = subparsers.add_parser("rerun", help="Rerun a specific workflow")
     sub_parser.add_argument("--workflow-id", type=str, help="Which workflow should be rerun",
                             required=True, dest="workflow_id")
     sub_parser.set_defaults(cmd_object="rerun")
@@ -139,7 +139,7 @@ if __name__ == '__main__':
     sub_parser.set_defaults(cmd_object="execution_graph")
 
     # Add status workflow availability
-    sub_parser = subparsers.add_parser("status", help="monitor a specific workflow")
+    sub_parser = subparsers.add_parser("status", help="Monitor a specific workflow")
     sub_parser.add_argument("--workflow-id", type=str, help="Which workflow status should be displayed",
                             default=None, dest="workflow_id")
     sub_parser.add_argument("--all", action="store_true", help="Display all workflows status",

workflows/alignment/__init__.py

@@ -21,7 +21,7 @@ from jflow.parameter import InputFileList, InputFile
 class Alignment (Workflow):
     
     def get_description(self):
-        return "align reads against a reference genome"
+        return "Align reads against a reference genome"
 
     def define_parameters(self, function="process"):
         self.add_input_file("read_1", "Which read1 files should be used", required=True, is_list=True)