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genotoul-bioinfo
jflow
Commits
0efbe439
Commit
0efbe439
authored
Oct 19, 2016
by
Floreal Cabanettes
Browse files
Add folders to the list of outputs (no downloadable) + get descriptions per components
parent
5e607311
Changes
1
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Inline
Side-by-side
src/jflow/workflow.py
View file @
0efbe439
...
@@ -34,6 +34,8 @@ from configparser import ConfigParser, NoOptionError
...
@@ -34,6 +34,8 @@ from configparser import ConfigParser, NoOptionError
from
inspect
import
getcallargs
from
inspect
import
getcallargs
from
datetime
import
date
as
ddate
from
datetime
import
date
as
ddate
from
collections
import
OrderedDict
import
jflow
import
jflow
import
jflow.utils
as
utils
import
jflow.utils
as
utils
from
jflow.utils
import
validate_email
from
jflow.utils
import
validate_email
...
@@ -585,9 +587,16 @@ class Workflow(threading.Thread):
...
@@ -585,9 +587,16 @@ class Workflow(threading.Thread):
return
None
return
None
else
:
else
:
return
None
return
None
def
get_description_per_components
(
self
):
dag
=
self
.
get_execution_graph
()
descriptions
=
{}
for
current_components
in
self
.
components
:
descriptions
[
current_components
.
get_nameid
()]
=
current_components
.
get_description
()
return
descriptions
def
get_outputs_per_components
(
self
):
def
get_outputs_per_components
(
self
):
outputs_files
=
{}
outputs_files
=
OrderedDict
()
for
current_components
in
self
.
components
:
for
current_components
in
self
.
components
:
#status = self.get_component_status(current_components.get_nameid())
#status = self.get_component_status(current_components.get_nameid())
outputs_files
[
current_components
.
get_nameid
()]
=
current_components
.
get_output_files
()
outputs_files
[
current_components
.
get_nameid
()]
=
current_components
.
get_output_files
()
...
...
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