Issues · genotoul-bioinfo / D-GENIES · GitLab

Big genomes: filter to keep acceptable in memory

#9 · created Oct 18, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 2
updated Nov 20, 2017
Add possibility to undo a sort

#14 · created Oct 24, 2017 by Floreal Cabanettes 1.0 Enhancement New feature
- CLOSED
- 0
updated Oct 25, 2017
Implement support of compressed fasta files (*.gz)

#17 · created Oct 30, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 0
updated Oct 30, 2017
Ménage

#20 · created Oct 31, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 3
updated Nov 20, 2017
Add max size for files and check it

#26 · created Nov 01, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 2
updated Dec 18, 2017
Identité : faire en absolu

#31 · created Nov 02, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 0
updated Nov 02, 2017
Stockage des données sous forme compressée

#34 · created Nov 02, 2017 by Floreal Cabanettes 1.0 Enhancement Won't fix
- CLOSED
- 2
updated Feb 07, 2018
Add global exception handler to catch all exception and pass job on error every time

#38 · created Nov 02, 2017 by Floreal Cabanettes 1.0 Bug Enhancement
- CLOSED
- 0
updated Nov 08, 2017
Do the index after the map, if this one has not failed

#39 · created Nov 02, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 0
updated Nov 03, 2017
Check extensions of files before upload (for local files)

#42 · created Nov 03, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 0
updated Nov 06, 2017
Handle memory exception from minimap

#43 · created Nov 03, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 1
updated Nov 17, 2017
Vérifier que les fichiers fasta fournis sont valides

#44 · created Nov 06, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 1
updated Dec 05, 2017
Split of contigs: when to do that?

#71 · created Nov 09, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 2
updated Dec 05, 2017
If more than 75% of contigs have length < 1% of the full fasta, do the sort automatically

#72 · created Nov 09, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 0
updated Jan 29, 2018
Export pictures with current zoom applied

#75 · created Nov 10, 2017 by Floreal Cabanettes 1.1 Enhancement
- CLOSED
- 1
updated Apr 11, 2018
Change restore zoom color

#76 · created Nov 10, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 0
updated Nov 17, 2017
Revoir le système de notifications

#77 · created Nov 10, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 0
updated Nov 13, 2017
input file names in the mail

#78 · created Nov 15, 2017 by Christophe Klopp 1.0 Enhancement
- CLOSED
- 4
updated Nov 17, 2017
Mettre le target avant le query dans le formulaire

#79 · created Nov 15, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 0
updated Nov 17, 2017
Disable sort on all-vs-all mode

#81 · created Nov 16, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 0
updated Nov 17, 2017
Scheduler local pour les soumissions de jobs locaux

#83 · created Nov 20, 2017 by Floreal Cabanettes 1.0 Enhancement New feature
- CLOSED
- 0
updated Nov 21, 2017
Cron pour vérifier les jobs locaux

#84 · created Nov 20, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 0
updated Nov 21, 2017
Export association table : add info of reverse

#85 · created Nov 20, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 0
updated Nov 20, 2017
Create a galery on the website to present results with...

#87 · created Dec 01, 2017 by Christophe Klopp 1.0 Enhancement New feature
- CLOSED
- 0
updated Jan 30, 2018
Change ORM

#91 · created Dec 13, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 0
updated Dec 13, 2017
Add check on file upload size server side

#94 · created Dec 21, 2017 by Floreal Cabanettes 1.0 Bug Enhancement
- CLOSED
- 0
updated Jan 04, 2018
Prepare big jobs on cluster

#96 · created Dec 22, 2017 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 1
updated Jan 05, 2018
Proposer plusieurs palettes de couleur

#98 · created Jan 04, 2018 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 0
updated Jan 29, 2018
List of query-target associations table: add coordinates

#99 · created Jan 08, 2018 by Floreal Cabanettes 1.0 Enhancement
- CLOSED
- 0
updated Feb 06, 2018
match coverage bar of the reference genome

#102 · created Jan 10, 2018 by Christophe Klopp 1.2 Enhancement Won't fix
- CLOSED
- 0
updated Jul 12, 2018
Remove BDD

#103 · created Jan 16, 2018 by Floreal Cabanettes 1.0 Jan 19, 2018 Bug Enhancement 2d
- CLOSED
- 2
updated Jan 23, 2018
Sort: still store sorted version on unsort

#104 · created Jan 17, 2018 by Floreal Cabanettes 1.0 Jan 19, 2018 Enhancement
- CLOSED
- 0
updated Jan 29, 2018
Improve databases

#105 · created Jan 17, 2018 by Floreal Cabanettes 1.0 Jan 18, 2018 Enhancement
- CLOSED
- 0
updated Jan 18, 2018
Add a table beside the gallery items with times and memory usage for all items

#112 · created Jan 31, 2018 by Floreal Cabanettes 1.0 Feb 2, 2018 Enhancement
- CLOSED
- 0
updated Feb 05, 2018
Windows compatibility

#115 · created Feb 08, 2018 by Floreal Cabanettes 1.0 Feb 23, 2018 Done Enhancement
- CLOSED
- 1
updated Feb 22, 2018
Ease integration of a new tool

#123 · created Mar 02, 2018 by Floreal Cabanettes 1.1 Apr 6, 2018 Enhancement
- CLOSED
- 2
- 0
updated Apr 03, 2018
Add mashmap tool

#124 · created Mar 02, 2018 by Floreal Cabanettes 1.2 Enhancement
- CLOSED
- 2
- 1
updated Jul 12, 2018
Add analytics logs

#125 · created Mar 14, 2018 by Floreal Cabanettes 1.1 Mar 15, 2018 Enhancement
- CLOSED
- 0
updated Apr 03, 2018
Add color palettes

#127 · created Apr 05, 2018 by Floreal Cabanettes 1.1 Apr 9, 2018 Enhancement
- CLOSED
- 0
updated Apr 09, 2018
Update doc for 1.1 version

#131 · created Apr 11, 2018 by Floreal Cabanettes 1.1 Enhancement
- CLOSED
- 0
updated Apr 12, 2018
Add doc for add new tools / new formats

#132 · created Apr 12, 2018 by Floreal Cabanettes 1.1 Apr 16, 2018 Enhancement
- CLOSED
- 0
updated Apr 13, 2018
Add percent of succeed jobs and of type of jobs (new map or plot existing ones) to statistics

#134 · created Jul 04, 2018 by Floreal Cabanettes 1.1.* Enhancement
- CLOSED
- 1
updated Jul 05, 2018
Show "Press Ctrl to zoom" on mouse wheel over dot plot (without ctrl key pressed)

#136 · created Jul 14, 2018 by Floreal Cabanettes 1.2 Jul 16, 2018 Enhancement
- CLOSED
- 0
updated Jul 16, 2018
Add "how to cite" to offline viewer

#137 · created Jul 14, 2018 by Floreal Cabanettes 1.2 Jul 16, 2018 Enhancement
- CLOSED
- 0
updated Jul 16, 2018