D-GENIES issueshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues2018-02-16T18:51:10+01:00https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/119In standalone mode, load all jobs on startup to add them in the result menu2018-02-16T18:51:10+01:00Floreal CabanettesIn standalone mode, load all jobs on startup to add them in the result menu1.0Floreal CabanettesFloreal Cabanettes2018-02-20https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/121Check XSS and other security breaches2018-02-19T14:48:41+01:00Floreal CabanettesCheck XSS and other security breaches1.0Floreal CabanettesFloreal Cabanettes2018-02-23https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/40Formulaire de contact2018-02-19T16:39:55+01:00Floreal CabanettesFormulaire de contactC'est quand même mieux qu'un mailto x)C'est quand même mieux qu'un mailto x)1.0Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/21Add example run2018-02-20T09:12:05+01:00Floreal CabanettesAdd example runAn example for test the app:
On avait aussi évoqué le fait de pouvoir mettre une URL en plus de l'upload: sur le même ligne.
On pourrait se servir de cette possibilité pour ajouter un bouton 'example' qui remplirait deux URL exemples. ...An example for test the app:
On avait aussi évoqué le fait de pouvoir mettre une URL en plus de l'upload: sur le même ligne.
On pourrait se servir de cette possibilité pour ajouter un bouton 'example' qui remplirait deux URL exemples. On pourrait utiliser deux génomes de champignons assez proches.
https://www.ncbi.nlm.nih.gov/genome/?term=saccharomyces
Afficher la vraie URL dans ce cas mais stocker l'exemple sur le serveur (ne pas le télécharger à chaque fois)1.0Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/115Windows compatibility2018-02-22T10:55:48+01:00Floreal CabanettesWindows compatibilityCheck program is compatible for windows in standalone mode, and make required changes to make it compatible.Check program is compatible for windows in standalone mode, and make required changes to make it compatible.1.0Floreal CabanettesFloreal Cabanettes2018-02-23https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/33Distribution du programme2018-02-22T10:56:13+01:00Floreal CabanettesDistribution du programmeMettre à disposition l'outil :
- Via PIP
- Via AnacondaMettre à disposition l'outil :
- Via PIP
- Via Anaconda1.0Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/74Menu Download / Install on genotoul hosted version2018-02-23T16:19:36+01:00Floreal CabanettesMenu Download / Install on genotoul hosted versionMaybe for all version... To be discussed!Maybe for all version... To be discussed!1.0Floreal CabanettesFloreal Cabanettes2018-02-23https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/125Add analytics logs2018-04-03T13:09:17+02:00Floreal CabanettesAdd analytics logsAdd logs which will save size of query/target for each runAdd logs which will save size of query/target for each run1.1Floreal CabanettesFloreal Cabanettes2018-03-15https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/123Ease integration of a new tool2018-04-03T13:11:55+02:00Floreal CabanettesEase integration of a new tool1.1Floreal CabanettesFloreal Cabanettes2018-04-06https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/126Add alignment file as input instead of query and target2018-04-09T09:48:42+02:00Floreal CabanettesAdd alignment file as input instead of query and targetSupports PAF and MAF (Multiple Alignment File) formatsSupports PAF and MAF (Multiple Alignment File) formats1.1Floreal CabanettesFloreal Cabanettes2018-04-06https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/127Add color palettes2018-04-09T10:02:21+02:00Floreal CabanettesAdd color palettes- a palette with low identity matches more visible than high identity matches (inverted)
- a plaette with all with the same color (all black)- a palette with low identity matches more visible than high identity matches (inverted)
- a plaette with all with the same color (all black)1.1Floreal CabanettesFloreal Cabanettes2018-04-09https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/128Add export and import as Tar file2018-04-10T11:21:13+02:00Floreal CabanettesAdd export and import as Tar fileExport indexes + paf file as a tar. Add an option to import it to show again the plot.Export indexes + paf file as a tar. Add an option to import it to show again the plot.1.1Floreal CabanettesFloreal Cabanettes2018-04-11https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/129Check if align file from URL is working2018-04-11T17:39:04+02:00Floreal CabanettesCheck if align file from URL is working1.1Floreal CabanettesFloreal Cabanettes2018-04-10https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/75Export pictures with current zoom applied2018-04-11T17:48:51+02:00Floreal CabanettesExport pictures with current zoom appliedUntil now, we export the picture by rest scale. Do it without that. Needs to be re-draw, do not use the scale.Until now, we export the picture by rest scale. Do it without that. Needs to be re-draw, do not use the scale.1.1Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/130Check index files are correct, like other files2018-04-11T18:23:57+02:00Floreal CabanettesCheck index files are correct, like other files1.1Floreal CabanettesFloreal Cabanettes2018-04-12https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/131Update doc for 1.1 version2018-04-12T17:33:06+02:00Floreal CabanettesUpdate doc for 1.1 version- New run form
- Export backup in menu
- Export SVG/PNG keep the zoom- New run form
- Export backup in menu
- Export SVG/PNG keep the zoom1.1Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/132Add doc for add new tools / new formats2018-04-13T16:51:35+02:00Floreal CabanettesAdd doc for add new tools / new formats1.1Floreal CabanettesFloreal Cabanettes2018-04-16https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/134Add percent of succeed jobs and of type of jobs (new map or plot existing one...2018-07-05T13:31:21+02:00Floreal CabanettesAdd percent of succeed jobs and of type of jobs (new map or plot existing ones) to statistics1.1.*Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/133Job fail if input files contains spaces2018-07-05T17:53:35+02:00Floreal CabanettesJob fail if input files contains spacesFix: after upload, replace spaces by underscoreFix: after upload, replace spaces by underscore1.1.*Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/135Add a toolbox to display match properties on moseover2018-07-09T15:41:19+02:00Floreal CabanettesAdd a toolbox to display match properties on moseover1.2Floreal CabanettesFloreal Cabanettes2018-07-19