D-GENIES issueshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues2018-04-09T10:02:21+02:00https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/127Add color palettes2018-04-09T10:02:21+02:00Floreal CabanettesAdd color palettes- a palette with low identity matches more visible than high identity matches (inverted)
- a plaette with all with the same color (all black)- a palette with low identity matches more visible than high identity matches (inverted)
- a plaette with all with the same color (all black)1.1Floreal CabanettesFloreal Cabanettes2018-04-09https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/126Add alignment file as input instead of query and target2018-04-09T09:48:42+02:00Floreal CabanettesAdd alignment file as input instead of query and targetSupports PAF and MAF (Multiple Alignment File) formatsSupports PAF and MAF (Multiple Alignment File) formats1.1Floreal CabanettesFloreal Cabanettes2018-04-06https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/123Ease integration of a new tool2018-04-03T13:11:55+02:00Floreal CabanettesEase integration of a new tool1.1Floreal CabanettesFloreal Cabanettes2018-04-06https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/125Add analytics logs2018-04-03T13:09:17+02:00Floreal CabanettesAdd analytics logsAdd logs which will save size of query/target for each runAdd logs which will save size of query/target for each run1.1Floreal CabanettesFloreal Cabanettes2018-03-15https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/74Menu Download / Install on genotoul hosted version2018-02-23T16:19:36+01:00Floreal CabanettesMenu Download / Install on genotoul hosted versionMaybe for all version... To be discussed!Maybe for all version... To be discussed!1.0Floreal CabanettesFloreal Cabanettes2018-02-23https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/33Distribution du programme2018-02-22T10:56:13+01:00Floreal CabanettesDistribution du programmeMettre à disposition l'outil :
- Via PIP
- Via AnacondaMettre à disposition l'outil :
- Via PIP
- Via Anaconda1.0Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/115Windows compatibility2018-02-22T10:55:48+01:00Floreal CabanettesWindows compatibilityCheck program is compatible for windows in standalone mode, and make required changes to make it compatible.Check program is compatible for windows in standalone mode, and make required changes to make it compatible.1.0Floreal CabanettesFloreal Cabanettes2018-02-23https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/122Query as reference: do we need to remove noise before2018-02-21T10:33:47+01:00Floreal CabanettesQuery as reference: do we need to remove noise beforeSome queries are set as match but they contains only noise... Do we have to keep them, so?Some queries are set as match but they contains only noise... Do we have to keep them, so?https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/21Add example run2018-02-20T09:12:05+01:00Floreal CabanettesAdd example runAn example for test the app:
On avait aussi évoqué le fait de pouvoir mettre une URL en plus de l'upload: sur le même ligne.
On pourrait se servir de cette possibilité pour ajouter un bouton 'example' qui remplirait deux URL exemples. ...An example for test the app:
On avait aussi évoqué le fait de pouvoir mettre une URL en plus de l'upload: sur le même ligne.
On pourrait se servir de cette possibilité pour ajouter un bouton 'example' qui remplirait deux URL exemples. On pourrait utiliser deux génomes de champignons assez proches.
https://www.ncbi.nlm.nih.gov/genome/?term=saccharomyces
Afficher la vraie URL dans ce cas mais stocker l'exemple sur le serveur (ne pas le télécharger à chaque fois)1.0Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/40Formulaire de contact2018-02-19T16:39:55+01:00Floreal CabanettesFormulaire de contactC'est quand même mieux qu'un mailto x)C'est quand même mieux qu'un mailto x)1.0Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/121Check XSS and other security breaches2018-02-19T14:48:41+01:00Floreal CabanettesCheck XSS and other security breaches1.0Floreal CabanettesFloreal Cabanettes2018-02-23https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/119In standalone mode, load all jobs on startup to add them in the result menu2018-02-16T18:51:10+01:00Floreal CabanettesIn standalone mode, load all jobs on startup to add them in the result menu1.0Floreal CabanettesFloreal Cabanettes2018-02-20https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/120Add a button to delete a job2018-02-16T18:03:13+01:00Floreal CabanettesAdd a button to delete a jobAdd protected jobs (for webserver mode) which cannot be deleted by this button. Or all gallery jobs are protected.Add protected jobs (for webserver mode) which cannot be deleted by this button. Or all gallery jobs are protected.1.0Floreal CabanettesFloreal Cabanettes2018-02-20https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/117Standalone version: problem with treatments which requires mail2018-02-16T14:08:51+01:00Floreal CabanettesStandalone version: problem with treatments which requires mailTwo possibilities:
- disable them on standalone version
- change code to be compatible withTwo possibilities:
- disable them on standalone version
- change code to be compatible with1.0Floreal CabanettesFloreal Cabanettes2018-02-23https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/118Sometimes (on windows at least) flask is really long to start. Check flask is...2018-02-15T14:12:14+01:00Floreal CabanettesSometimes (on windows at least) flask is really long to start. Check flask is already started before launch the browser1.0Floreal CabanettesFloreal Cabanettes2018-02-23https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/116Remove "you will receive a mail...." on standalone version2018-02-15T14:12:14+01:00Floreal CabanettesRemove "you will receive a mail...." on standalone version1.0Floreal CabanettesFloreal Cabanettes2018-02-23https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/114Standalone version2018-02-08T17:44:09+01:00Floreal CabanettesStandalone versionTo launch D-Genies on a local computer, with only 1 user.To launch D-Genies on a local computer, with only 1 user.1.0Floreal CabanettesFloreal Cabanettes2018-02-23https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/34Stockage des données sous forme compressée2018-02-07T10:34:13+01:00Floreal CabanettesStockage des données sous forme compressée=> Il faut inciter les utilisateurs a utiliser un format compressé=> Il faut inciter les utilisateurs a utiliser un format compressé1.0Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/19Must fasta files be stored in gzipped format to keep space?2018-02-07T10:33:30+01:00Floreal CabanettesMust fasta files be stored in gzipped format to keep space?More time required to read them, but less space needed. Minimap can work with gzipped files!More time required to read them, but less space needed. Minimap can work with gzipped files!1.0Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/99List of query-target associations table: add coordinates2018-02-06T15:21:28+01:00Floreal CabanettesList of query-target associations table: add coordinates1.0Floreal CabanettesFloreal Cabanettes