D-GENIES issueshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues2018-02-23T16:19:36+01:00https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/74Menu Download / Install on genotoul hosted version2018-02-23T16:19:36+01:00Floreal CabanettesMenu Download / Install on genotoul hosted versionMaybe for all version... To be discussed!Maybe for all version... To be discussed!1.0Floreal CabanettesFloreal Cabanettes2018-02-23https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/125Add analytics logs2018-04-03T13:09:17+02:00Floreal CabanettesAdd analytics logsAdd logs which will save size of query/target for each runAdd logs which will save size of query/target for each run1.1Floreal CabanettesFloreal Cabanettes2018-03-15https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/126Add alignment file as input instead of query and target2018-04-09T09:48:42+02:00Floreal CabanettesAdd alignment file as input instead of query and targetSupports PAF and MAF (Multiple Alignment File) formatsSupports PAF and MAF (Multiple Alignment File) formats1.1Floreal CabanettesFloreal Cabanettes2018-04-06https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/123Ease integration of a new tool2018-04-03T13:11:55+02:00Floreal CabanettesEase integration of a new tool1.1Floreal CabanettesFloreal Cabanettes2018-04-06https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/127Add color palettes2018-04-09T10:02:21+02:00Floreal CabanettesAdd color palettes- a palette with low identity matches more visible than high identity matches (inverted)
- a plaette with all with the same color (all black)- a palette with low identity matches more visible than high identity matches (inverted)
- a plaette with all with the same color (all black)1.1Floreal CabanettesFloreal Cabanettes2018-04-09https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/129Check if align file from URL is working2018-04-11T17:39:04+02:00Floreal CabanettesCheck if align file from URL is working1.1Floreal CabanettesFloreal Cabanettes2018-04-10https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/128Add export and import as Tar file2018-04-10T11:21:13+02:00Floreal CabanettesAdd export and import as Tar fileExport indexes + paf file as a tar. Add an option to import it to show again the plot.Export indexes + paf file as a tar. Add an option to import it to show again the plot.1.1Floreal CabanettesFloreal Cabanettes2018-04-11https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/130Check index files are correct, like other files2018-04-11T18:23:57+02:00Floreal CabanettesCheck index files are correct, like other files1.1Floreal CabanettesFloreal Cabanettes2018-04-12https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/132Add doc for add new tools / new formats2018-04-13T16:51:35+02:00Floreal CabanettesAdd doc for add new tools / new formats1.1Floreal CabanettesFloreal Cabanettes2018-04-16https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/137Add "how to cite" to offline viewer2018-07-16T10:30:52+02:00Floreal CabanettesAdd "how to cite" to offline viewer1.2Floreal CabanettesFloreal Cabanettes2018-07-16https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/136Show "Press Ctrl to zoom" on mouse wheel over dot plot (without ctrl key pres...2018-07-16T11:58:18+02:00Floreal CabanettesShow "Press Ctrl to zoom" on mouse wheel over dot plot (without ctrl key pressed)1.2Floreal CabanettesFloreal Cabanettes2018-07-16https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/135Add a toolbox to display match properties on moseover2018-07-09T15:41:19+02:00Floreal CabanettesAdd a toolbox to display match properties on moseover1.2Floreal CabanettesFloreal Cabanettes2018-07-19https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/134Add percent of succeed jobs and of type of jobs (new map or plot existing one...2018-07-05T13:31:21+02:00Floreal CabanettesAdd percent of succeed jobs and of type of jobs (new map or plot existing ones) to statistics1.1.*Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/133Job fail if input files contains spaces2018-07-05T17:53:35+02:00Floreal CabanettesJob fail if input files contains spacesFix: after upload, replace spaces by underscoreFix: after upload, replace spaces by underscore1.1.*Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/131Update doc for 1.1 version2018-04-12T17:33:06+02:00Floreal CabanettesUpdate doc for 1.1 version- New run form
- Export backup in menu
- Export SVG/PNG keep the zoom- New run form
- Export backup in menu
- Export SVG/PNG keep the zoom1.1Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/124Add mashmap tool2018-07-12T14:36:31+02:00Floreal CabanettesAdd mashmap toolhttps://github.com/marbl/MashMaphttps://github.com/marbl/MashMap1.2Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/102match coverage bar of the reference genome2018-07-12T14:37:03+02:00Christophe Kloppmatch coverage bar of the reference genomeThis feature is present in r2cat : A horizontal bar at the bottom helps to assess the coverage of the matches: maximum coverage is displayed in black and fades to light grey with less coverage. Uncovered regions are marked explicitly.
ht...This feature is present in r2cat : A horizontal bar at the bottom helps to assess the coverage of the matches: maximum coverage is displayed in black and fades to light grey with less coverage. Uncovered regions are marked explicitly.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2820676/1.2Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/100Permettre le téléchargement d'une page web permettant de visualiser en intera...2018-07-13T17:21:28+02:00Floreal CabanettesPermettre le téléchargement d'une page web permettant de visualiser en interactif en local1.2Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/99List of query-target associations table: add coordinates2018-02-06T15:21:28+01:00Floreal CabanettesList of query-target associations table: add coordinates1.0Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/98Proposer plusieurs palettes de couleur2018-01-29T17:17:28+01:00Floreal CabanettesProposer plusieurs palettes de couleur- Normal (actuelle)
- Daltonien+
- Noir & Blanc- Normal (actuelle)
- Daltonien+
- Noir & Blanc1.0Floreal CabanettesFloreal Cabanettes