D-GENIES issueshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues2018-07-16T10:30:52+02:00https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/137Add "how to cite" to offline viewer2018-07-16T10:30:52+02:00Floreal CabanettesAdd "how to cite" to offline viewer1.2Floreal CabanettesFloreal Cabanettes2018-07-16https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/136Show "Press Ctrl to zoom" on mouse wheel over dot plot (without ctrl key pres...2018-07-16T11:58:18+02:00Floreal CabanettesShow "Press Ctrl to zoom" on mouse wheel over dot plot (without ctrl key pressed)1.2Floreal CabanettesFloreal Cabanettes2018-07-16https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/134Add percent of succeed jobs and of type of jobs (new map or plot existing one...2018-07-05T13:31:21+02:00Floreal CabanettesAdd percent of succeed jobs and of type of jobs (new map or plot existing ones) to statistics1.1.*Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/132Add doc for add new tools / new formats2018-04-13T16:51:35+02:00Floreal CabanettesAdd doc for add new tools / new formats1.1Floreal CabanettesFloreal Cabanettes2018-04-16https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/131Update doc for 1.1 version2018-04-12T17:33:06+02:00Floreal CabanettesUpdate doc for 1.1 version- New run form
- Export backup in menu
- Export SVG/PNG keep the zoom- New run form
- Export backup in menu
- Export SVG/PNG keep the zoom1.1Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/127Add color palettes2018-04-09T10:02:21+02:00Floreal CabanettesAdd color palettes- a palette with low identity matches more visible than high identity matches (inverted)
- a plaette with all with the same color (all black)- a palette with low identity matches more visible than high identity matches (inverted)
- a plaette with all with the same color (all black)1.1Floreal CabanettesFloreal Cabanettes2018-04-09https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/125Add analytics logs2018-04-03T13:09:17+02:00Floreal CabanettesAdd analytics logsAdd logs which will save size of query/target for each runAdd logs which will save size of query/target for each run1.1Floreal CabanettesFloreal Cabanettes2018-03-15https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/124Add mashmap tool2018-07-12T14:36:31+02:00Floreal CabanettesAdd mashmap toolhttps://github.com/marbl/MashMaphttps://github.com/marbl/MashMap1.2Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/123Ease integration of a new tool2018-04-03T13:11:55+02:00Floreal CabanettesEase integration of a new tool1.1Floreal CabanettesFloreal Cabanettes2018-04-06https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/115Windows compatibility2018-02-22T10:55:48+01:00Floreal CabanettesWindows compatibilityCheck program is compatible for windows in standalone mode, and make required changes to make it compatible.Check program is compatible for windows in standalone mode, and make required changes to make it compatible.1.0Floreal CabanettesFloreal Cabanettes2018-02-23https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/112Add a table beside the gallery items with times and memory usage for all items2018-02-05T16:21:19+01:00Floreal CabanettesAdd a table beside the gallery items with times and memory usage for all items1.0Floreal CabanettesFloreal Cabanettes2018-02-02https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/105Improve databases2018-01-18T11:04:46+01:00Floreal CabanettesImprove databasesFor Job and Session:
- new is a classe method that create the new object from informations given (as now, but as class method) and returns it. It's called without instance a new object.
- So when we instance a new object, the Job/Sessi...For Job and Session:
- new is a classe method that create the new object from informations given (as now, but as class method) and returns it. It's called without instance a new object.
- So when we instance a new object, the Job/Session already exists. So we execute the load method in the __init__, and load method becomes private (_load)
- So we remove the load calling from other methods, not needed anymore1.0Floreal CabanettesFloreal Cabanettes2018-01-18https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/104Sort: still store sorted version on unsort2018-01-29T15:31:00+01:00Floreal CabanettesSort: still store sorted version on unsortJust set if current vision is sorted or not (.sorted file)Just set if current vision is sorted or not (.sorted file)1.0Floreal CabanettesFloreal Cabanettes2018-01-19https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/103Remove BDD2018-01-23T10:26:58+01:00Floreal CabanettesRemove BDDTest with 240 concurrent jobs splitted in 4 groups (4 users). 8 jobs failed because of two much opened connections.
For jobs, we can replace BDD by a file in each job folder.
For sessions, may be we can replace BDD by a storage in memo...Test with 240 concurrent jobs splitted in 4 groups (4 users). 8 jobs failed because of two much opened connections.
For jobs, we can replace BDD by a file in each job folder.
For sessions, may be we can replace BDD by a storage in memory...1.0Floreal CabanettesFloreal Cabanettes2018-01-19https://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/102match coverage bar of the reference genome2018-07-12T14:37:03+02:00Christophe Kloppmatch coverage bar of the reference genomeThis feature is present in r2cat : A horizontal bar at the bottom helps to assess the coverage of the matches: maximum coverage is displayed in black and fades to light grey with less coverage. Uncovered regions are marked explicitly.
ht...This feature is present in r2cat : A horizontal bar at the bottom helps to assess the coverage of the matches: maximum coverage is displayed in black and fades to light grey with less coverage. Uncovered regions are marked explicitly.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2820676/1.2Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/99List of query-target associations table: add coordinates2018-02-06T15:21:28+01:00Floreal CabanettesList of query-target associations table: add coordinates1.0Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/98Proposer plusieurs palettes de couleur2018-01-29T17:17:28+01:00Floreal CabanettesProposer plusieurs palettes de couleur- Normal (actuelle)
- Daltonien+
- Noir & Blanc- Normal (actuelle)
- Daltonien+
- Noir & Blanc1.0Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/96Prepare big jobs on cluster2018-01-05T16:26:38+01:00Floreal CabanettesPrepare big jobs on clusterBecause prepare step can be huge...Because prepare step can be huge...1.0Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/94Add check on file upload size server side2018-01-04T13:05:59+01:00Floreal CabanettesAdd check on file upload size server side1.0Floreal CabanettesFloreal Cabanetteshttps://forgemia.inra.fr/genotoul-bioinfo/dgenies/-/issues/91Change ORM2017-12-13T16:55:46+01:00Floreal CabanettesChange ORMPony ORM has some problems until the beginning. With new implementations it is really a problem. Try to found another ORM...Pony ORM has some problems until the beginning. With new implementations it is really a problem. Try to found another ORM...1.0Floreal CabanettesFloreal Cabanettes