if(!dgenies||!dgenies.result){throw"dgenies.result wasn't included!"}dgenies.result.controls={};dgenies.result.controls.init=function(){$("#sort-contigs").click(dgenies.result.controls.launch_sort_contigs);$("#hide-noise").click(dgenies.result.controls.launch_hide_noise);$("#summary").click(dgenies.result.controls.summary);$("#delete-job").click(dgenies.result.controls.delete_job);$("form#select-zone input.submit").click(dgenies.result.controls.select_zone);$("form#export select").change(dgenies.result.export.export)};dgenies.result.controls.summary=function(){dgenies.show_loading("Building...");window.setTimeout(()=>{dgenies.post(`/summary/${dgenies.result.id_res}`,{},function(data){dgenies.hide_loading();if(data["success"]){if(data["status"]==="done"){dgenies.result.summary.show(data["percents"])}elseif(data["status"]==="waiting"){dgenies.result.controls.summary()}}else{dgenies.notify(data["message"]||"An error occurred! Please contact us to report the bug","danger")}})},0)};dgenies.result.controls.launch_sort_contigs=function(){d3.boxplot.zoom.reset_scale();window.setTimeout(()=>{dgenies.show_loading("Building...");window.setTimeout(()=>{dgenies.post(`/sort/${dgenies.result.id_res}`,{},function(data){if(data["success"]){dgenies.reset_loading_message();window.setTimeout(()=>{d3.boxplot.launch(data,true)},0)}else{dgenies.hide_loading();dgenies.notify(data["message"]||"An error occurred! Please contact us to report the bug","danger")}})},0)},0)};dgenies.result.controls.launch_reverse_contig=function(){if(d3.boxplot.query_selected!==null){d3.boxplot.zoom.reset_scale();window.setTimeout(()=>{dgenies.show_loading("Building...");window.setTimeout(()=>{dgenies.post(`/reverse-contig/${dgenies.result.id_res}`,{"contig":d3.boxplot.query_selected},function(data){if(data["success"]){dgenies.reset_loading_message();window.setTimeout(()=>{d3.boxplot.launch(data,true)},0)}else{dgenies.hide_loading();dgenies.notify(data["message"]||"An error occurred! Please contact us to report the bug","danger")}})},0)},0)}else{dgenies.notify("Error: no query selected. Please contact us to report the bug","danger")}};dgenies.result.controls.launch_hide_noise=function(){d3.boxplot.zoom.reset_scale();window.setTimeout(()=>{dgenies.show_loading("Building...");window.setTimeout(()=>{dgenies.post(`/freenoise/${dgenies.result.id_res}`,{noise:dgenies.noise?0:1},function(data){if(data["success"]){dgenies.noise=!dgenies.noise;dgenies.reset_loading_message();window.setTimeout(()=>{d3.boxplot.launch(data,true,true)},0)}else{dgenies.hide_loading();dgenies.notify(data["message"]||"An error occurred! Please contact us to report the bug","danger")}})},0)},0)};dgenies.result.controls.select_zone=function(){letcontig_select=$("#select-contig").find(":selected");lettarget_select=$("#select-target").find(":selected");if(contig_select.val()!=="###NONE###"&&target_select.val()!=="###NONE###"){d3.boxplot.select_zone(null,null,target_select.val(),contig_select.val(),true)}else{dgenies.notify("Please select zones into zoom!","danger",2000)}};dgenies.result.controls.do_delete_job=function(){dgenies.post(`/delete/${dgenies.result.id_res}`,{},function(data){if(data["success"]){dgenies.notify("Your job has been deleted!","success",1500);window.setTimeout(()=>{dgenies.result.remove_job_from_cookie(dgenies.result.id_res);window.location="/"},1500)}else{dgenies.notify("error"indata?data["error"]:"An error has occurred. Please contact the support","danger")}})};dgenies.result.controls.delete_job=function(){letdialog=$("<div>").attr("id","dialog-confirm").attr("title","Delete job?");leticon=$("<span>").attr("class","ui-icon ui-icon-help").css("float","left").css("margin","12px 12px 20px 0");letbody=$("<p>");body.append(icon);body.append("Confirm deletion of this job? This operation is definitive.");dialog.append(body);dialog.dialog({resizable:false,height:"auto",width:500,modal:true,buttons:{"Yes":function(){$(this).dialog("close");dgenies.result.controls.do_delete_job()},"No":function(){$(this).dialog("close")}}})};
if(!dgenies||!dgenies.result){throw"dgenies.result wasn't included!"}dgenies.result.export={};dgenies.result.export.get_svg=function(){return"<svg width='5000px' height='5000px' viewBox='0 0 100 100'>"+$("#draw-in").find(">svg").html()+"</svg>"};dgenies.result.export.save_file=function(blob,format){dgenies.hide_loading();saveAs(blob,`map_${d3.boxplot.name_y}_to_${d3.boxplot.name_x}.${format}`)};dgenies.result.export.export_png=function(){dgenies.show_loading("Building picture...",210);window.setTimeout(()=>{letexport_div=$("div#export-pict");export_div.html("").append($("<canvas>"));canvg(export_div.find("canvas")[0],dgenies.result.export.get_svg());letcanvas=export_div.find("canvas")[0];canvas.toBlob(function(blob){dgenies.result.export.save_file(blob,"png");export_div.html("")},"image/png")},0)};dgenies.result.export.export_svg=function(){dgenies.show_loading("Building picture...",180);window.setTimeout(()=>{lettransform=d3.boxplot.container.attr("transform");letafter=function(){letblob=newBlob([dgenies.result.export.get_svg()],{type:"image/svg+xml"});d3.boxplot.zoom.restore_scale(transform);dgenies.result.export.save_file(blob,"svg")};d3.boxplot.zoom.reset_scale(true,after)},0)};dgenies.result.export.export_paf=function(){letexport_div=$("div#export-pict");export_div.html("");export_div.append($("<a>").attr("href",`/paf/${dgenies.result.id_res}`).attr("download",`map_${d3.boxplot.name_y}_to_${d3.boxplot.name_x}.paf`).attr("id","my-download").text("download"));dgenies.hide_loading();document.getElementById("my-download").click()};dgenies.result.export.dl_fasta=function(gzip=false){letexport_div=$("div#export-pict");export_div.html("");export_div.append($("<a>").attr("href",`/fasta-query/${dgenies.result.id_res}`).attr("download",d3.boxplot.name_y+(gzip?".fasta.gz":".fasta")).attr("id","my-download").text("download"));dgenies.hide_loading();document.getElementById("my-download").click()};dgenies.result.export.export_fasta=function(compress=false){dgenies.show_loading("Building file...",180);dgenies.post("/get-fasta-query/"+dgenies.result.id_res,{gzip:compress},function(data,success){if(data["status"]===0){window.setTimeout(()=>{dgenies.result.export.export_fasta()},10000)}elseif(data["status"]===2){dgenies.result.export.dl_fasta(data["gzip"])}elseif(data["status"]===1){dgenies.hide_loading();dgenies.notify("We are building your Fasta file. You will receive by mail a link to download it soon!","info")}else{dgenies.hide_loading();dgenies.notify("An error has occurred. Please contact us to report the bug","danger")}})};dgenies.result.export.ask_export_fasta=function(){if(dgenies.mode==="webserver"){letdialog=$("<div>").attr("id","dialog-confirm").attr("title","Gzip?");leticon=$("<span>").attr("class","ui-icon ui-icon-help").css("float","left").css("margin","12px 12px 20px 0");letbody=$("<p>");body.append(icon);body.append("Compression is recommanded on slow connections. Download Gzip file?");dialog.append(body);dialog.dialog({resizable:false,height:"auto",width:500,modal:true,buttons:{"Use default":function(){$(this).dialog("close");dgenies.result.export.export_fasta(false)},"Use Gzip":function(){$(this).dialog("close");dgenies.result.export.export_fasta(true)},Cancel:function(){$(this).dialog("close")}}})}else{dgenies.result.export.export_fasta(false)}};dgenies.result.export.export_association_table=function(){letexport_div=$("div#export-pict");export_div.html("");export_div.append($("<a>").attr("href",`/qt-assoc/${dgenies.result.id_res}`).attr("download",d3.boxplot.name_y+"_"+d3.boxplot.name_x+"_assoc.tsv").attr("id","my-download").text("download"));dgenies.hide_loading();document.getElementById("my-download").click()};dgenies.result.export.export_no_association_file=function(to){window.setTimeout(()=>{dgenies.show_loading("Building file...",180);leton=to==="query"?"target":"query";dgenies.post("/no-assoc/"+dgenies.result.id_res,{"to":to},function(data,success){dgenies.hide_loading();if(!data["empty"]){letblob=newBlob([data["file_content"]],{type:"text/plain"});saveAs(blob,`no_${to}_matches_${d3.boxplot.name_y}_to_${d3.boxplot.name_x}.txt`)}else{dgenies.notify(`No contigs in ${to} have None match with any ${on}!`,"success")}})},0)};dgenies.result.export.export_query_as_reference_fasta_webserver=function(){dgenies.post(`/build-query-as-reference/${dgenies.result.id_res}`,{},function(data,success){if(data["success"]){dgenies.notify("You will receive a mail soon with the link to download your Fasta file","success")}else{dgenies.notify(`An error has occurred. Please contact the support`,"danger")}})};dgenies.result.export.export_query_as_reference_fasta_standalone=function(){dgenies.show_loading("Building file...",180);window.setTimeout(()=>{dgenies.post(`/build-query-as-reference/${dgenies.result.id_res}`,{},function(data,success){if(data["success"]){letexport_div=$("div#export-pict");export_div.html("");export_div.append($("<a>").attr("href",`/get-query-as-reference/${dgenies.result.id_res}`).attr("download",`as_reference_${d3.boxplot.name_y}.fasta`).attr("id","my-download").text("download"));document.getElementById("my-download").click();dgenies.hide_loading()}else{dgenies.notify(`An error has occurred. Please contact the support`,"danger")}})},0)};dgenies.result.export.export=function(){letselect=$("form#export select");letselection=parseInt(select.val());window.setTimeout(()=>{if(selection>0){letasync=false;if(selection===1){dgenies.result.export.export_svg();async=true}elseif(selection===2){dgenies.result.export.export_png();async=true}elseif(selection===3)dgenies.result.export.export_paf();elseif(selection===4){dgenies.result.export.ask_export_fasta();async=true}elseif(selection===5){dgenies.result.export.export_association_table()}elseif(selection===6){dgenies.result.export.export_no_association_file("query");async=true}elseif(selection===7){dgenies.result.export.export_no_association_file("target");async=true}elseif(selection===8){if(dgenies.mode==="webserver"){dgenies.result.export.export_query_as_reference_fasta_webserver()}else{dgenies.result.export.export_query_as_reference_fasta_standalone();async=true}}elsedgenies.notify("Not supported yet!","danger",2000);if(!async)dgenies.hide_loading();select.val("0")}},0)};
if(!dgenies){throw"dgenies wasn't included!"}dgenies.run={};// Init global variables:
dgenies.run.s_id=null;dgenies.run.allowed_ext=[];dgenies.run.max_upload_file_size=-1;dgenies.run.files=[undefined,undefined];dgenies.run.allow_upload=false;dgenies.run.ping_interval=null;dgenies.run.target_example="";dgenies.run.query_example="";dgenies.run.init=function(s_id,allowed_ext,max_upload_file_size=1073741824,target_example="",query_example=""){dgenies.run.s_id=s_id;dgenies.run.allowed_ext=allowed_ext;dgenies.run.max_upload_file_size=max_upload_file_size;dgenies.run.target_example=target_example;dgenies.run.query_example=query_example;dgenies.run.restore_form();dgenies.run.set_events();dgenies.run.init_fileuploads()};dgenies.run.restore_form=function(){dgenies.run.change_fasta_type("query",$("select.query").find(":selected").text().toLowerCase(),true);dgenies.run.change_fasta_type("target",$("select.target").find(":selected").text().toLowerCase(),true)};dgenies.run.upload_next=function(){letnext=dgenies.run.files.pop();while(next===undefined&&dgenies.run.files.length>0){next=dgenies.run.files.pop()}if(next!==undefined){next.submit();returntrue}dgenies.run.do_submit();returnfalse};dgenies.run.__upload_server_error=function(fasta,data){dgenies.notify("message"indata?data["message"]:`An error has occured when uploading <b>${fasta}</b> file. Please contact us to report the bug!`,"danger");dgenies.run.enable_form()};dgenies.run.allowed_file=function(filename){returnfilename.indexOf(".")!==-1&&(dgenies.run.allowed_ext.indexOf(filename.rsplit(".",1)[1].toLowerCase())!==-1||dgenies.run.allowed_ext.indexOf(filename.rsplit(".",2).splice(1).join(".").toLowerCase())!==-1)};dgenies.run.init_fileuploads=function(){$("input.file-query").fileupload({dataType:"json",formData:{"s_id":dgenies.run.s_id},add:function(e,data){letfilename=data.files[0].name;if(dgenies.run.allowed_file(filename))dgenies.run.files[0]=data;else{$("input.file-query").trigger("change");// The value is null after fired
dgenies.run.s_id=null;dgenies.run.allowed_ext=[];dgenies.run.max_upload_file_size=-1;dgenies.run.files=[undefined,undefined];dgenies.run.allow_upload=false;dgenies.run.ping_interval=null;dgenies.run.target_example="";dgenies.run.query_example="";dgenies.run.tool_has_ava={};dgenies.run.init=function(s_id,allowed_ext,max_upload_file_size=1073741824,target_example="",query_example="",tool_has_ava={}){dgenies.run.s_id=s_id;dgenies.run.allowed_ext=allowed_ext;dgenies.run.max_upload_file_size=max_upload_file_size;dgenies.run.target_example=target_example;dgenies.run.query_example=query_example;dgenies.run.tool_has_ava=tool_has_ava;dgenies.run.restore_form();dgenies.run.set_events();dgenies.run.init_fileuploads()};dgenies.run.restore_form=function(){dgenies.run.change_fasta_type("query",$("select.query").find(":selected").text().toLowerCase(),true);dgenies.run.change_fasta_type("target",$("select.target").find(":selected").text().toLowerCase(),true)};dgenies.run.upload_next=function(){letnext=dgenies.run.files.pop();while(next===undefined&&dgenies.run.files.length>0){next=dgenies.run.files.pop()}if(next!==undefined){next.submit();returntrue}dgenies.run.do_submit();returnfalse};dgenies.run.__upload_server_error=function(fasta,data){dgenies.notify("message"indata?data["message"]:`An error has occured when uploading <b>${fasta}</b> file. Please contact us to report the bug!`,"danger");dgenies.run.enable_form()};dgenies.run.allowed_file=function(filename){returnfilename.indexOf(".")!==-1&&(dgenies.run.allowed_ext.indexOf(filename.rsplit(".",1)[1].toLowerCase())!==-1||dgenies.run.allowed_ext.indexOf(filename.rsplit(".",2).splice(1).join(".").toLowerCase())!==-1)};dgenies.run.init_fileuploads=function(){$("input.file-query").fileupload({dataType:"json",formData:{"s_id":dgenies.run.s_id},add:function(e,data){letfilename=data.files[0].name;if(dgenies.run.allowed_file(filename))dgenies.run.files[0]=data;else{$("input.file-query").trigger("change");// The value is null after fired
dgenies.notify(`File <b>${filename}</b> is not supported!`,"danger",3000)}},progressall:function(e,data){varprogress=parseInt(data.loaded/data.total*100,10);$("#progress-query").find(".bar").css("width",progress+"%")},success:function(data,success){if(data["success"]!=="OK"){dgenies.run.__upload_server_error("query",data)}elseif("error"indata["files"][0]){dgenies.run.add_error("Query file: "+data["files"][0]["error"],"error");dgenies.run.enable_form()}else{$("input#query").val(data["files"][0]["name"]);dgenies.run.hide_loading("query");dgenies.run.show_success("query");dgenies.run.upload_next()}},error:function(data,success){dgenies.run.__upload_server_error("query",data)}});$("input.file-target").fileupload({dataType:"json",formData:{"s_id":dgenies.run.s_id},add:function(e,data){letfilename=data.files[0].name;if(dgenies.run.allowed_file(filename))dgenies.run.files[1]=data;else{$("input.file-target").trigger("change");// The value is null after fired
dgenies.notify(`File <b>${filename}</b> is not supported!`,"danger",3000)}},progressall:function(e,data){varprogress=parseInt(data.loaded/data.total*100,10);$("#progress-target").find(".bar").css("width",progress+"%")},success:function(data,success){if(data["success"]!=="OK"){dgenies.run.__upload_server_error("target",data)}elseif("error"indata["files"][0]){dgenies.run.add_error("Target file: "+data["files"][0]["error"],"error");dgenies.run.enable_form()}else{$("input#target").val(data["files"][0]["name"]);dgenies.run.hide_loading("target");dgenies.run.show_success("target");dgenies.run.upload_next()}},error:function(data,success){dgenies.run.__upload_server_error("target",data)}});//Trigger events on hidden file inputs:
$("button#button-query").click(function(){$("input.file-query").trigger("click")});$("button#button-target").click(function(){$("input.file-target").trigger("click")})};dgenies.run.get_file_size_str=function(size){if(size<1000){returnsize+" O"}elseif(size<1000000){returnMath.round(size/1024)+" Ko"}elseif(size<1000000000){returnMath.round(size/1048576)+" Mo"}returnMath.round(size/1073741824)+" Go"};dgenies.run.fill_examples=function(){$("select.target").val("1").trigger("change");$("input#target").val("example://"+dgenies.run.target_example);if(dgenies.run.query_example!==""){$("select.query").val("1").trigger("change");$("input#query").val("example://"+dgenies.run.query_example)}};dgenies.run.set_events=function(){letmax_file_size_txt=dgenies.run.get_file_size_str(dgenies.run.max_upload_file_size);$("input.file-query").change(function(){letfile_size_query=$("div.file-size.query");if(this.files.length>0){if(this.files[0].size<=dgenies.run.max_upload_file_size){file_size_query.html(dgenies.run.get_file_size_str(this.files[0].size));dgenies.run.set_filename(this.files[0].name,"query")}else{$(this).val("");dgenies.run.set_filename("","query");dgenies.notify(`File exceed the size limit (${max_file_size_txt})`,"danger",2000);file_size_query.html("")}}else{dgenies.run.set_filename("","query");file_size_query.html("")}});$("input.file-target").change(function(){letfile_size_target=$("div.file-size.target");if(this.files.length>0){if(this.files[0].size<=dgenies.run.max_upload_file_size){file_size_target.html(dgenies.run.get_file_size_str(this.files[0].size));dgenies.run.set_filename(this.files[0].name,"target")}else{$(this).val("");dgenies.run.set_filename("","target");dgenies.notify(`File exceed the size limit (${max_file_size_txt})`,"danger",2000);file_size_target.html("")}}else{dgenies.run.set_filename("","target");file_size_target.html("")}});$("button#submit").click(function(){dgenies.run.submit()});$("select.query").change(function(){dgenies.run.change_fasta_type("query",$("select.query").find(":selected").text().toLowerCase())});$("select.target").change(function(){dgenies.run.change_fasta_type("target",$("select.target").find(":selected").text().toLowerCase())});$("button#example").click(function(){dgenies.run.fill_examples()})};dgenies.run.change_fasta_type=function(fasta,type,keep_url=false){letbutton=$("button#button-"+fasta);letinput=$("input#"+fasta);letcontainer=$("div."+fasta+"-label");$("input.file-"+fasta).val("");if(type==="local"){button.show();input.prop("readonly",true);input.val("");container.width(300)}else{button.hide();input.prop("readonly",false);if(!keep_url)input.val("");container.width(348)}$("div.file-size."+fasta).html("")};dgenies.run.set_filename=function(name,fasta){$("input#"+fasta).val(name)};dgenies.run.disable_form=function(){$("input, select, button").prop("disabled",true)};dgenies.run.enable_form=function(){$(".progress").find(".bar").css("width","0%");$("input, select, button").prop("disabled",false);$("div#uploading-loading").hide();$("button#submit").show();dgenies.run.hide_loading("query");dgenies.run.hide_loading("target");dgenies.run.hide_success("query");dgenies.run.hide_success("target");dgenies.run.files=[undefined,undefined];dgenies.run.restore_form()};dgenies.run.do_submit=function(){$("div#uploading-loading").html("Submitting form...");dgenies.post("/launch_analysis",{"id_job":$("input#id_job").val(),"email":dgenies.mode==="webserver"?$("input#email").val():"","query":$("input#query").val(),"query_type":$("select.query").find(":selected").text().toLowerCase(),"target":$("input#target").val(),"target_type":$("select.target").find(":selected").text().toLowerCase(),"s_id":dgenies.run.s_id},function(data,status){if(data["success"]){window.location=data["redirect"]}else{if(dgenies.run.ping_interval!==null){clearInterval(dgenies.run.ping_interval);dgenies.run.ping_interval=null}if("errors"indata){for(leti=0;i<data["errors"].length;i++){dgenies.notify(data["errors"][i],"danger",3000)}}else{dgenies.notify("An error has occurred. Please contact the support","danger",3000)}dgenies.run.enable_form()}})};dgenies.run.add_error=function(error){$("div.errors-submit ul.flashes").append($("<li>").append(error))};dgenies.run.valid_form=function(){lethas_errors=false;// Check name:
$("button#button-query").click(function(){$("input.file-query").trigger("click")});$("button#button-target").click(function(){$("input.file-target").trigger("click")})};dgenies.run.get_file_size_str=function(size){if(size<1000){returnsize+" O"}elseif(size<1000000){returnMath.round(size/1024)+" Ko"}elseif(size<1000000000){returnMath.round(size/1048576)+" Mo"}returnMath.round(size/1073741824)+" Go"};dgenies.run.fill_examples=function(){$("select.target").val("1").trigger("change");$("input#target").val("example://"+dgenies.run.target_example);if(dgenies.run.query_example!==""){$("select.query").val("1").trigger("change");$("input#query").val("example://"+dgenies.run.query_example)}};dgenies.run.set_events=function(){letmax_file_size_txt=dgenies.run.get_file_size_str(dgenies.run.max_upload_file_size);$("input.file-query").change(function(){letfile_size_query=$("div.file-size.query");if(this.files.length>0){if(this.files[0].size<=dgenies.run.max_upload_file_size){file_size_query.html(dgenies.run.get_file_size_str(this.files[0].size));dgenies.run.set_filename(this.files[0].name,"query")}else{$(this).val("");dgenies.run.set_filename("","query");dgenies.notify(`File exceed the size limit (${max_file_size_txt})`,"danger",2000);file_size_query.html("")}}else{dgenies.run.set_filename("","query");file_size_query.html("")}});$("input.file-target").change(function(){letfile_size_target=$("div.file-size.target");if(this.files.length>0){if(this.files[0].size<=dgenies.run.max_upload_file_size){file_size_target.html(dgenies.run.get_file_size_str(this.files[0].size));dgenies.run.set_filename(this.files[0].name,"target")}else{$(this).val("");dgenies.run.set_filename("","target");dgenies.notify(`File exceed the size limit (${max_file_size_txt})`,"danger",2000);file_size_target.html("")}}else{dgenies.run.set_filename("","target");file_size_target.html("")}});$("button#submit").click(function(){dgenies.run.submit()});$("select.query").change(function(){dgenies.run.change_fasta_type("query",$("select.query").find(":selected").text().toLowerCase())});$("select.target").change(function(){dgenies.run.change_fasta_type("target",$("select.target").find(":selected").text().toLowerCase())});$("button#example").click(function(){dgenies.run.fill_examples()})};dgenies.run.change_fasta_type=function(fasta,type,keep_url=false){letbutton=$("button#button-"+fasta);letinput=$("input#"+fasta);letcontainer=$("div."+fasta+"-label");$("input.file-"+fasta).val("");if(type==="local"){button.show();input.prop("readonly",true);input.val("");container.width(300)}else{button.hide();input.prop("readonly",false);if(!keep_url)input.val("");container.width(348)}$("div.file-size."+fasta).html("")};dgenies.run.set_filename=function(name,fasta){$("input#"+fasta).val(name)};dgenies.run.disable_form=function(){$("input, select, button").prop("disabled",true)};dgenies.run.enable_form=function(){$(".progress").find(".bar").css("width","0%");$("input, select, button").prop("disabled",false);$("div#uploading-loading").hide();$("button#submit").show();dgenies.run.hide_loading("query");dgenies.run.hide_loading("target");dgenies.run.hide_success("query");dgenies.run.hide_success("target");dgenies.run.files=[undefined,undefined];dgenies.run.restore_form()};dgenies.run.do_submit=function(){$("div#uploading-loading").html("Submitting form...");dgenies.post("/launch_analysis",{"id_job":$("input#id_job").val(),"email":dgenies.mode==="webserver"?$("input#email").val():"","query":$("input#query").val(),"query_type":$("select.query").find(":selected").text().toLowerCase(),"target":$("input#target").val(),"target_type":$("select.target").find(":selected").text().toLowerCase(),"s_id":dgenies.run.s_id,"tool":$("input[name=tool]:checked").val()},function(data,status){if(data["success"]){window.location=data["redirect"]}else{if(dgenies.run.ping_interval!==null){clearInterval(dgenies.run.ping_interval);dgenies.run.ping_interval=null}if("errors"indata){for(leti=0;i<data["errors"].length;i++){dgenies.notify(data["errors"][i],"danger",3000)}}else{dgenies.notify("An error has occurred. Please contact the support","danger",3000)}dgenies.run.enable_form()}})};dgenies.run.add_error=function(error){$("div.errors-submit ul.flashes").append($("<li>").append(error))};dgenies.run.valid_form=function(){lethas_errors=false;// Check name:
if($("input#id_job").val().length===0){$("label.id-job").addClass("error");dgenies.run.add_error("Name of your job is required!");has_errors=true}// Check mail:
if(dgenies.mode==="webserver"){letemail=$("input#email").val();letmail_re=/^.+@.+\..+$/;if(email.match(mail_re)===null){$("label.email").addClass("error");if(email==="")dgenies.run.add_error("Email is required!");elsedgenies.run.add_error("Email is not correct!");has_errors=true}}//Check input target:
if($("input#target").val().length===0){$("label.file-target").addClass("error");dgenies.run.add_error("Target fasta is required!");has_errors=true}// Returns
if($("input#target").val().length===0){$("label.file-target").addClass("error");dgenies.run.add_error("Target fasta is required!");has_errors=true}//Check input query:
lettool=$("input[name=tool]:checked").val();if(!dgenies.run.tool_has_ava[tool]&&$("input#query").val().length===0){$("label.file-query").addClass("error");dgenies.run.add_error("Query fasta is required!");has_errors=true}// Returns
return!has_errors};dgenies.run.show_loading=function(fasta){$(".loading-file."+fasta).show()};dgenies.run.hide_loading=function(fasta){$(".loading-file."+fasta).hide()};dgenies.run.show_success=function(fasta){$(".upload-success."+fasta).show()};dgenies.run.hide_success=function(fasta){$(".upload-success."+fasta).hide()};dgenies.run.reset_errors=function(){$("label").removeClass("error");$("div.errors-submit ul.flashes").find("li").remove()};dgenies.run.ask_for_upload=function(){console.log("Ask for upload...");dgenies.post("/ask-upload",{"s_id":dgenies.run.s_id},function(data,status){if(data["success"]){letallow_upload=data["allowed"];if(allow_upload){$("div#uploading-loading").html("Uploading files...");dgenies.run.ping_interval=window.setInterval(dgenies.run.ping_upload,15000);dgenies.run.upload_next()}else{window.setTimeout(dgenies.run.ask_for_upload,15000)}}else{dgenies.notify("message"indata?data["message"]:"An error has occurred. Please contact the support","danger",3000)}},undefined,false)};dgenies.run.ping_upload=function(){dgenies.post("/ping-upload",{"s_id":dgenies.run.s_id},function(data,status){})};dgenies.run.check_url=function(url){returnurl.startsWith("http://")||url.startsWith("https://")||url.startsWith("ftp://")||url.startsWith("example://")};dgenies.run.start_uploads=function(){letquery_type=parseInt($("select.query").val());lethas_uploads=false;letquery_val=$("input#query").val();if(query_type===0&&query_val.length>0){$("button#button-query").hide();dgenies.run.show_loading("query");has_uploads=true}else{dgenies.run.files[0]=undefined;if(query_val!==""&&!dgenies.run.check_url(query_val)){dgenies.run.add_error("Query file: invalid URL","error");dgenies.run.enable_form();returnfalse}}lettarget_type=parseInt($("select.target").val());lettarget_val=$("input#target").val();if(target_type===0&&target_val.length>0){$("button#button-target").hide();dgenies.run.show_loading("target");has_uploads=true}else{dgenies.run.files[1]=undefined;if(target_val!==""&&!dgenies.run.check_url(target_val)){dgenies.run.add_error("Target file: invalid URL","error");dgenies.run.enable_form();returnfalse}}if(has_uploads){$("div#uploading-loading").html("Asking for upload...");dgenies.run.ask_for_upload()}else{dgenies.run.upload_next()}};dgenies.run.show_global_loading=function(){$("button#submit").hide();$("button#example").hide();$("div#uploading-loading").show()};dgenies.run.submit=function(){dgenies.run.reset_errors();if(dgenies.run.valid_form()){dgenies.run.disable_form();dgenies.run.show_global_loading();dgenies.run.start_uploads()}};