@@ -10,6 +10,11 @@ You can use the demo instance [here](http://dgenies.toulouse.inra.fr).
Or you can install your own instance. The install documentation is available [here](http://dgenies.toulouse.inra.fr/install).
How to cite?
------------
Cabanettes F, Klopp C. (2018) D-GENIES: dot plot large genomes in an interactive, efficient and simple way. PeerJ 6:e4958 https://doi.org/10.7717/peerj.4958
<pclass="description lead">D-GENIES – for <strong>D</strong>otplot large <strong>Gen</strong>omes in an <strong>I</strong>nteractive, <strong>E</strong>fficient and <strong>S</strong>imple way – is an online tool
<pclass="description lead">D-GENIES – for <strong>D</strong>otplot large <strong>Gen</strong>omes in an <strong>I</strong>nteractive, <strong>E</strong>fficient and <strong>S</strong>imple way – is an online tool
designed to compare two genomes. It supports large genome and you can interact with the dot plot to improve the visualisation.</p>
<pclass="description">We use minimap version 2 to align the two genomes. Then, the PAF file is parsed and plotted into
an interactive plot written with d3.js library.</p>
<pclass="description">D-Genies also allows to display dot plots from other aligners by uploading their
<ahref="/documentation/formats">PAF</a> or <ahref="/documentation/formats#maf-multiple-alignment-file">MAF</a> alignment
<spanclass="label label-primary"style="position:absolute;top:-10px;left:-10px">How to cite</span>
<spanstyle="font-weight: bold; font-size: 0.9em;">Cabanettes F, Klopp C. (2018) D-GENIES: dot plot large genomes in an interactive, efficient and simple way. PeerJ 6:e4958 <ahref="https://doi.org/10.7717/peerj.4958">https://doi.org/10.7717/peerj.4958</a></span>