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genotoul-bioinfo
D-GENIES
Commits
bdbd9beb
Commit
bdbd9beb
authored
Jan 04, 2018
by
Floreal Cabanettes
Browse files
Fix reverse of one specific contig
parent
00de5e5a
Changes
1
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Inline
Side-by-side
lib/paf.py
View file @
bdbd9beb
...
...
@@ -450,6 +450,8 @@ class Paf:
self
.
parse_paf
(
False
)
reorient_contigs
=
[
contig_name
]
self
.
reorient_contigs_in_paf
(
reorient_contigs
)
if
not
self
.
idx_q
.
endswith
(
".sorted"
):
self
.
idx_q
+=
".sorted"
self
.
_update_query_index
(
reorient_contigs
)
self
.
set_sorted
(
True
)
self
.
parsed
=
False
...
...
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