Commit bdbd9beb authored by Floreal Cabanettes's avatar Floreal Cabanettes
Browse files

Fix reverse of one specific contig

parent 00de5e5a
......@@ -450,6 +450,8 @@ class Paf:
self.parse_paf(False)
reorient_contigs = [contig_name]
self.reorient_contigs_in_paf(reorient_contigs)
if not self.idx_q.endswith(".sorted"):
self.idx_q += ".sorted"
self._update_query_index(reorient_contigs)
self.set_sorted(True)
self.parsed = False
......
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