Commit a5fb93db authored by Floreal Cabanettes's avatar Floreal Cabanettes
Browse files

Add docstrings to job_manager module + some refactoring

parent e58053ee
...@@ -163,3 +163,5 @@ texinfo_documents = [ ...@@ -163,3 +163,5 @@ texinfo_documents = [
# -- Extension configuration ------------------------------------------------- # -- Extension configuration -------------------------------------------------
autodoc_default_flags = ['private-members']
dgenies package Packages & Modules
=============== ------------------
Subpackages Subpackages
----------- ^^^^^^^^^^^
.. toctree:: .. toctree::
dgenies.lib dgenies.lib
Submodules Submodules
---------- ^^^^^^^^^^
.. toctree:: .. toctree::
......
...@@ -6,12 +6,6 @@ ...@@ -6,12 +6,6 @@
Welcome to D-Genies's documentation! Welcome to D-Genies's documentation!
==================================== ====================================
.. toctree::
:maxdepth: 2
:caption: Contents:
Dot plots are widely used to quickly compare sequence sets. They provide a synthetic similarity overview, highlighting repetitions, breaks and inversions. Different tools have been developed to easily generated genomic alignment dot plots, but they are often limited in the input sequence size. D-GENIES is a standalone and web application performing large genome alignments using minimap2 software package and generating interactive dot plots. It enables users to sort query sequences along the reference, zoom in the plot and download several image, alignment or sequence files. D-GENIES is an easy-to-install, open-source software package (GPL) developed in Python and JavaScript. The source code is available at https://github.com/genotoul-bioinfo/dgenies and it can be tested at http://dgenies.toulouse.inra.fr/. Dot plots are widely used to quickly compare sequence sets. They provide a synthetic similarity overview, highlighting repetitions, breaks and inversions. Different tools have been developed to easily generated genomic alignment dot plots, but they are often limited in the input sequence size. D-GENIES is a standalone and web application performing large genome alignments using minimap2 software package and generating interactive dot plots. It enables users to sort query sequences along the reference, zoom in the plot and download several image, alignment or sequence files. D-GENIES is an easy-to-install, open-source software package (GPL) developed in Python and JavaScript. The source code is available at https://github.com/genotoul-bioinfo/dgenies and it can be tested at http://dgenies.toulouse.inra.fr/.
......
Packages & Modules .. toctree::
------------------
.. toctree:: dgenies.rst
:maxdepth: 4
dgenies
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