Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
genotoul-bioinfo
D-GENIES
Commits
89eba178
Commit
89eba178
authored
Feb 06, 2018
by
Floreal Cabanettes
Browse files
Fix mstake
parent
80c9bd62
Changes
1
Hide whitespace changes
Inline
Side-by-side
src/dgenies/lib/paf.py
View file @
89eba178
...
...
@@ -497,7 +497,7 @@ class Paf:
:return: content of the file
"""
index
=
self
.
idx_q
if
to
==
"query"
else
self
.
idx_t
name
,
contigs_list
,
contigs
,
reversed
,
abs_start
,
c_len
=
Index
.
load
(
self
.
idx_t
)
name
,
contigs_list
,
contigs
,
reversed
,
abs_start
,
c_len
=
Index
.
load
(
index
)
with
open
(
self
.
paf
,
"r"
)
as
paf
:
for
line
in
paf
:
c_name
=
line
.
strip
(
"
\n
"
).
split
(
"
\t
"
)[
0
if
to
==
"query"
else
5
]
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment