Commit 7b4d4b76 authored by Floreal Cabanettes's avatar Floreal Cabanettes
Browse files

Remove debug lines

parent 5a794da6
......@@ -89,7 +89,6 @@ class Paf:
}
for cls, c_lines in lines.items():
for line in c_lines:
print(line)
x1 = line[0]
x2 = line[1]
y1 = line[2]
......@@ -205,13 +204,10 @@ class Paf:
max_value = max(counts)
max_index = counts.index(max_value)
limit_index = -1
print(max_value, max_index)
for i in range(max_index, len(counts)):
if counts[i] < max_value / 100:
print("pass")
limit_index = i
break
print(limit_index)
if limit_index > -1:
lines = self.remove_noise(lines, bins[limit_index])
......@@ -481,7 +477,6 @@ class Paf:
for contig in self.q_order:
strand = "+"
if contig in self.q_reversed:
print("TRUE")
strand = "-" if self.q_reversed[contig] else "+"
if contig in query_on_target:
content += "%s\t%s\t%s\n" % (contig, query_on_target[contig] or "None", strand)
......
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