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Commit 68180630 authored by Floreal Cabanettes's avatar Floreal Cabanettes
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Fix overlapping

parent 04c45e9e
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src/dgenies/lib/paf.py
View file @ 68180630
......@@ -485,23 +485,28 @@ class Paf:
:param next_search:
:return:
"""
if start == 82909225 and end == 82921831:
s = 0 # bidon
elif start == 82917437 and end == 82928921:
s = 1 # bidon
item = all_pos[next_search]
i_start = item[0]
i_end = item[1]
i_cat = item[2]
with open("logs.txt", "a") as logs:
print("CAT", cat, i_cat, type(cat), type(i_cat), file=logs)
if i_start < start < i_end:
if i_start <= start < i_end:
# iiiiiiiiiiiiiiiiiiiiii
# ******ccccccccccc...
if end < i_end:
# iiiiiiiiiiiiiiiiiiiiii
# ******ccccccccccc...
# ******ccccccccccc*****
if i_cat < cat:
all_pos.remove(item)
all_pos.insert(next_search, (end+1, i_end, i_cat))
all_pos.insert(next_search, (start, end, cat))
all_pos.insert(next_search, (i_start, start-1, i_cat))
if start > i_start:
all_pos.insert(next_search, (i_start, start-1, i_cat))
else:
pass # Nothing to do: the best captures the worst
elif end == i_end:
......@@ -510,7 +515,8 @@ class Paf:
if i_cat < cat:
all_pos.remove(item)
all_pos.insert(next_search, (start, end, cat))
all_pos.insert(next_search, (i_start, start-1, i_cat))
if start > i_start:
all_pos.insert(next_search, (i_start, start-1, i_cat))
else:
pass # Nothing to do: the best captures the worst
elif end > i_end:
......@@ -522,8 +528,10 @@ class Paf:
c_end = all_pos[next_search+1][0]-1
if i_cat < cat:
all_pos.remove(item)
all_pos.insert(next_search, (start, end, cat))
all_pos.insert(next_search, (i_start, start-1, i_cat))
all_pos.insert(next_search, (start, c_end, cat))
if start > i_start:
all_pos.insert(next_search, (i_start, start-1, i_cat))
next_s += 1
elif i_cat == cat:
all_pos[next_search] = (i_start, c_end, cat)
elif i_cat > cat:
......@@ -536,7 +544,7 @@ class Paf:
all_pos = self._find_pos(c_end+1, end, cat, all_pos, next_s, min_search=next_search,
max_search=max_search)
elif i_start < end < i_end:
elif i_start < end <= i_end:
# ********iiiiiiiiiiiiiiiiiiiiiiii
# ...cccccccccccccc**********
if start == i_start:
......@@ -545,7 +553,8 @@ class Paf:
if i_cat < cat:
all_pos.remove(item)
all_pos.insert(next_search, (start, end, cat))
all_pos.insert(next_search, (end+1, i_end, i_cat))
if end < i_end:
all_pos.insert(next_search, (end+1, i_end, i_cat))
else:
pass # Nothing to do: the best captures the worst
else: # start < i_start (start > i_start already checked before)
......@@ -556,7 +565,8 @@ class Paf:
c_start = all_pos[next_search-1][1] + 1
if i_cat < cat:
all_pos.remove(item)
all_pos.insert(next_search, (end+1, i_end, i_cat))
if end < i_end:
all_pos.insert(next_search, (end+1, i_end, i_cat))
all_pos.insert(next_search, (c_start, end, i_cat))
elif i_cat == cat:
all_pos[next_search] = (c_start, i_end, cat)
......@@ -567,6 +577,35 @@ class Paf:
all_pos = self._find_pos(start, c_start-1, cat, all_pos, next_search - 1, min_search=min_search,
max_search=next_search)
elif i_start > start and i_end < end:
# ******iiiiiiiii*******
# cccccccccccccccccccccc
c_start = start
if next_search > 0 and all_pos[next_search - 1][1] > start:
c_start = all_pos[next_search - 1][1] + 1
c_end = end
next_s = next_search + 1
if next_search < len(all_pos) - 1 and all_pos[next_search + 1][0] < end:
c_end = all_pos[next_search + 1][0] - 1
if i_cat < cat:
all_pos.remove(item)
all_pos.insert(next_search, (c_start, c_end, cat))
elif i_cat == cat:
all_pos[next_search] = (c_start, c_end, cat)
else:
all_pos.remove(item)
all_pos.insert(next_search, (i_end+1, c_end, cat))
all_pos.insert(next_search, (i_start, i_end, i_cat))
all_pos.insert(next_search, (c_start, i_start-1, cat))
next_s = next_search + 3
# Search for adjacents:
if c_start != start:
all_pos = self._find_pos(start, c_start - 1, cat, all_pos, next_search - 1, min_search=min_search,
max_search=next_search)
if c_end != end:
all_pos = self._find_pos(c_end + 1, end, cat, all_pos, next_s, min_search=next_search,
max_search=max_search)
elif start == i_start and end == i_end:
if cat > i_cat:
all_pos[next_search] = (start, end, cat)
......@@ -624,7 +663,7 @@ class Paf:
#self.lines[cat].sort(key=lambda k: k[0])
for line in self.lines[cat]:
start = min(line[0], line[1])
end = max(line[0], line[1])+1
end = max(line[0], line[1])
if len(position_idy) == 0:
position_idy.append((start, end, int(cat)))
else:
......@@ -632,9 +671,19 @@ class Paf:
len(position_idy)-1)
# position_idy[start:end] = [cat] * (end - start)
all_pos = ["*"] * self.len_t
print("P2")
for line in position_idy:
# if 82917437 <= line[0] <= 82928921 or 82917437 <= line[1] <= 82928921:
# print(line)
# for pos in range(line[0], line[1]):
# if all_pos[pos] == "*":
# all_pos[pos] = "1"
# else:
# print(line)
# raise Exception("There is an overlap!!!!!!")
count = line[1] - line[0]
percents[str(line[2])] += count
percents["-1"] -= count
......
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