Commit 38c8973b authored by Floreal Cabanettes's avatar Floreal Cabanettes
Browse files

Change limit of line size for reorient

parent ad58a9e2
......@@ -169,7 +169,7 @@ class Paf:
# Select sample of tested lines:
while i < len(lines) and lines[i][-1] > max_len * 0.1 \
and lines[i][-1] >= 0.1 * min(self.q_contigs[contig], self.t_contigs[chrom]):
and lines[i][-1] >= 0.05 * min(self.q_contigs[contig], self.t_contigs[chrom]):
i += 1
selected_lines = lines[:i]
......
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