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genotoul-bioinfo
D-GENIES
Commits
30d78e83
Commit
30d78e83
authored
Apr 16, 2018
by
Floreal Cabanettes
Browse files
Fix tools for windows
parent
3d261244
Changes
2
Hide whitespace changes
Inline
Side-by-side
src/dgenies/tools.py
View file @
30d78e83
...
@@ -33,7 +33,7 @@ class Tool:
...
@@ -33,7 +33,7 @@ class Tool:
else
:
else
:
self
.
exec
=
exec
.
replace
(
"###SYSEXEC###"
,
os
.
path
.
dirname
(
sys
.
executable
))
self
.
exec
=
exec
.
replace
(
"###SYSEXEC###"
,
os
.
path
.
dirname
(
sys
.
executable
))
if
exec_cluster
is
None
or
exec_cluster
==
"default"
:
if
exec_cluster
is
None
or
exec_cluster
==
"default"
:
self
.
exec_cluster
=
exec
.
replace
(
"###SYSEXEC###"
,
os
.
path
.
dirname
(
sys
.
executable
))
self
.
exec_cluster
=
exec
else
:
else
:
self
.
exec_cluster
=
exec_cluster
.
replace
(
"###SYSEXEC###"
,
os
.
path
.
dirname
(
sys
.
executable
))
self
.
exec_cluster
=
exec_cluster
.
replace
(
"###SYSEXEC###"
,
os
.
path
.
dirname
(
sys
.
executable
))
...
...
win32/data/tools.yaml
View file @
30d78e83
minimap2
:
minimap2
:
exec
:
###SYSEXEC###/
../
minimap2/minimap2.exe
exec
:
"
###SYSEXEC###/minimap2/minimap2.exe
"
command_line
:
"
{exe}
-t
{threads}
{target}
{query}
>
{out}"
command_line
:
"
{exe}
-t
{threads}
{target}
{query}
>
{out}"
all_vs_all
:
"
{exe}
-t
{threads}
-X
{target}
{target}
>
{out}"
all_vs_all
:
"
{exe}
-t
{threads}
-X
{target}
{target}
>
{out}"
max_memory
:
40
max_memory
:
40
...
...
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