Disable sort in All-vs-All mode, Fixes #81

js/d3.boxplot.js

@@ -90,6 +90,14 @@ d3.boxplot.launch = function(res, update=false) {
     }
     d3.boxplot.name_x = res["name_x"];
     d3.boxplot.name_y = res["name_y"];
+
+    if (d3.boxplot.name_x === d3.boxplot.name_y) {
+        $("input#sort-contigs").hide();
+    }
+    else {
+        $("input#sort-contigs").show();
+    }
+
     d3.boxplot.lines = res["lines"];
     d3.boxplot.x_len = res["x_len"];
     d3.boxplot.y_len = res["y_len"];

js/dgenies.result.controls.js

@@ -25,7 +25,7 @@ dgenies.result.controls.launch_sort_contigs = function () {
                     }
                     else {
                         dgenies.hide_loading();
-                        dgenies.notify("An error occurred! Please contact us to report the bug", "danger");
+                        dgenies.notify(data["message"] || "An error occurred! Please contact us to report the bug", "danger");
                     }
                 }
             );

lib/job_manager.py

@@ -12,6 +12,7 @@ import requests
 import wget
 from jinja2 import Template
 import traceback
+from pathlib import Path
 
 
 class JobManager:
@@ -189,6 +190,7 @@ class JobManager:
                         Functions.index_file(self.query, query_index)
                     else:
                         shutil.copyfile(target_index, query_index)
+                        Path(os.path.join(self.output_dir, ".all-vs-all")).touch()
                     job = Job.get(id_job=self.id_job)
                     job.status = "success"
                     db.commit()

srv/main.py

@@ -190,16 +190,18 @@ def get_graph():
 
 @app.route('/sort/<id_res>', methods=['POST'])
 def sort_graph(id_res):
-    paf = os.path.join(app_data, id_res, "map.paf")
-    idx1 = os.path.join(app_data, id_res, "query.idx")
-    idx2 = os.path.join(app_data, id_res, "target.idx")
-    paf = Paf(paf, idx1, idx2, False)
-    paf.sort()
-    if paf.parsed:
-        res = paf.get_d3js_data()
-        res["success"] = True
-        return jsonify(res)
-    return jsonify({"success": False, "message": paf.error})
+    if not os.path.exists(os.path.join(APP_DATA, id_res, ".all-vs-all")):
+        paf = os.path.join(app_data, id_res, "map.paf")
+        idx1 = os.path.join(app_data, id_res, "query.idx")
+        idx2 = os.path.join(app_data, id_res, "target.idx")
+        paf = Paf(paf, idx1, idx2, False)
+        paf.sort()
+        if paf.parsed:
+            res = paf.get_d3js_data()
+            res["success"] = True
+            return jsonify(res)
+        return jsonify({"success": False, "message": paf.error})
+    return jsonify({"success": False, "message": "Sort is not available for All-vs-All mode"})
 
 
 @app.route('/get-fasta-query/<id_res>', methods=['POST'])