Fix export fasta bug + remove debug lines

js/d3.boxplot.events.js

@@ -100,7 +100,6 @@ d3.boxplot.events.stroke_linecap = function(rounded) {
 };
 
 d3.boxplot.events.stroke_width = function (width) {
-    console.log(width);
     let stroke_width = d3.boxplot.scale / 600;
     if (width === "1") {
         stroke_width = d3.boxplot.scale / 400;
@@ -111,7 +110,6 @@ d3.boxplot.events.stroke_width = function (width) {
     else if (width === "3") {
         stroke_width = d3.boxplot.scale / 100;
     }
-    console.log(stroke_width);
     d3.boxplot.content_lines_width = stroke_width;
     d3.selectAll("path.content-lines").attr("stroke-width", stroke_width / d3.boxplot.zoom_scale_lines);
 };
\ No newline at end of file

js/dgenies.result.export.js

@@ -63,7 +63,6 @@ dgenies.result.export.export_fasta = function(compress=false) {
             gzip: compress
         },
         function(data, success) {
-            console.log(data);
             if (data["status"] === 0) {
                 window.setTimeout(() => {
                     dgenies.result.export.export_fasta();

lib/functions.py

@@ -181,9 +181,7 @@ class Functions:
 
     @staticmethod
     def sort_fasta(job_name, fasta_file, index_file, lock_file, compress=False, mailer=None):
-        print("Loading index...")
         index, sample_name = Functions.read_index(index_file)
-        print("Starting fasta sort...")
         is_compressed = fasta_file.endswith(".gz")
         if is_compressed:
             fasta_file = Functions.uncompress(fasta_file)
@@ -198,17 +196,14 @@ class Functions:
         if is_compressed:
             os.remove(fasta_file)
         if compress:
-            print("Compress...")
             Functions.compress(fasta_file_o)
         os.remove(lock_file)
         if mailer is not None:
             Functions.send_fasta_ready(mailer, job_name, sample_name, compress)
-        print("Fasta sort done!")
 
     @staticmethod
-    def compress_and_send_mail(job_name, fasta_file, index_file, compressed, mailer):
-        print("Compress!")
+    def compress_and_send_mail(job_name, fasta_file, index_file, lock_file, compressed, mailer):
         Functions.compress(fasta_file)
         index, sample_name = Functions.read_index(index_file)
         Functions.send_fasta_ready(mailer, job_name, sample_name, compressed)
-        print("DONE!")
\ No newline at end of file
+        os.remove(lock_file)

srv/main.py

@@ -235,6 +235,7 @@ def build_fasta(id_res):
                     "job_name": id_res,
                     "fasta_file": query_fasta,
                     "index_file": os.path.join(res_dir, "query.idx.sorted"),
+                    "lock_file": lock_query,
                     "compressed": compressed,
                     "mailer": mailer
                 })