Make working for windows

src/dgenies/tools.py

@@ -31,11 +31,11 @@ class Tool:
         if exec == "default":
             self.exec = os.path.join(os.path.dirname(inspect.getfile(self.__class__)), "bin", self.name)
         else:
-            self.exec = exec
+            self.exec = exec.replace("###SYSEXEC###", os.path.dirname(sys.executable))
         if exec_cluster is None or exec_cluster == "default":
-            self.exec_cluster = exec
+            self.exec_cluster = exec.replace("###SYSEXEC###", os.path.dirname(sys.executable))
         else:
-            self.exec_cluster = exec_cluster
+            self.exec_cluster = exec_cluster.replace("###SYSEXEC###", os.path.dirname(sys.executable))
 
         # Command line:
         if "{exe}" in command_line and "{target}" in command_line and "{query}" in command_line and "{out}" \

win32/data/application.properties

@@ -16,10 +16,6 @@ max_upload_size_ava = 1G
 max_upload_file_size = 1G
 
 
-[softwares]
-minimap2 = ###SYSEXEC###/../minimap2/minimap2.exe
-
-
 [debug]
 # Debug (enable only for tests)
 enable = False

win32/data/tools.yaml

+minimap2:
+  exec: ###SYSEXEC###/../minimap2/minimap2.exe
+  command_line: "{exe} -t {threads} {target} {query} > {out}"
+  all_vs_all: "{exe} -t {threads} -X {target} {target} > {out}"
+  max_memory: 40
+  threads: 8
+  parser: !!null
+  split_before: True
+  help: "Better for low similar fasta files"
+  order: 0
+