README.md 863 Bytes
Newer Older
jacqueslagnel's avatar
jacqueslagnel committed
1
2
3
4
5
6
7
8
9
10
11
12
13
# transdecoder Singularity container
Bionformatics package transdecoder<br>
TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks. Developer docs: https://github.com/TransDecoder/TransDecoder
https://transdecoder.github.io
transdecoder Version: 5.5.0<br>

Singularity container based on the recipe: Singularity.transdecoder_v5.5.0

Package installation using Miniconda3 V4.7.12<br>

image singularity (V>=3.3) is automaticly built (gitlab-ci) and pushed on the registry using the .gitlab-ci.yml <br>

can be pull (singularity version >=3.3) with:<br>
Jacques Lagnel's avatar
Jacques Lagnel committed
14
singularity pull transdecoder_v5.5.0.sif oras://registry.forgemia.inra.fr/gafl/singularity/transdecoder/transdecoder:latest
jacqueslagnel's avatar
jacqueslagnel committed
15
16