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GAFL
Pipelines_Snakemake
wgs_gatk
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8b89d1e6
Commit
8b89d1e6
authored
May 21, 2021
by
Jacques Lagnel
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update README
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@@ -15,7 +15,16 @@
https://gatkforums.broadinstitute.org/gatk/discussion/2806/howto-apply-hard-filters-to-a-call-set
https://gatk.broadinstitute.org/hc/en-us/articles/360035890471-Hard-filtering-germline-short-variants
_**Warning:** For the reference fasta file, he reference definition line must not contain space or special character._
<div
class=
"panel panel-warning"
>
**Warning**
{: .panel-heading}
<div
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"panel-body"
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For the reference fasta file, he reference definition line must not contain space or special character.
</div>
</div>
## Snakemake features: fastq from csv file, config, modules, SLURM
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