Commit 8b89d1e6 authored by Jacques Lagnel's avatar Jacques Lagnel
Browse files

update README

parent 4ce2f515
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https://gatkforums.broadinstitute.org/gatk/discussion/2806/howto-apply-hard-filters-to-a-call-set
https://gatk.broadinstitute.org/hc/en-us/articles/360035890471-Hard-filtering-germline-short-variants
_**Warning:** For the reference fasta file, he reference definition line must not contain space or special character._
<div class="panel panel-warning">
**Warning**
{: .panel-heading}
<div class="panel-body">
For the reference fasta file, he reference definition line must not contain space or special character.
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</div>
## Snakemake features: fastq from csv file, config, modules, SLURM
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