Commit 07fb4bb7 authored by Jacques Lagnel's avatar Jacques Lagnel
Browse files

removed dup

parent 0e26b902
......@@ -26,13 +26,6 @@
"out" : "{rule}_{wildcards.sample}.out"
},
"merge_bams" :
{
"time" : "12:00:00",
"cores" : 10,
"mem" : "16g"
},
"freebayes" :
{
"jobname" : "{rule}",
......@@ -66,15 +59,6 @@
"out" : "{rule}_{wildcards.sample}.out"
},
"trim_and_merge_pe" :
{
"jobname" : "{rule}_{wildcards.sample}",
"time" : "08:00:00",
"cores" : 4,
"mem" : "16g",
"out" : "{rule}_{wildcards.sample}.out"
},
"cutadapt_pe" :
{
"jobname" : "{rule}_{wildcards.sample}",
......@@ -314,6 +298,26 @@
"mem" : "2g"
},
"MarkDuplicates" :
{
"jobname" : "{rule}_{wildcards.sample}",
"time" : "36:00:00",
"cores" : 1,
"mem" : "7g",
"out" : "{rule}_{wildcards.sample}.out"
},
"SplitNCigarReads" :
{
"jobname" : "{rule}_{wildcards.sample}",
"time" : "36:00:00",
"cores" : 1,
"mem" : "7g",
"out" : "{rule}_{wildcards.sample}.out"
},
"gatk4_hc" :
{
"jobname" : "{rule}_{wildcards.sample}-{wildcards.mychr}",
......
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